RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA939370" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA939370 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2190073 2190073 PRJNA939370_S_NODE_82_length_816_cov_3.998696_g55_i0 PRJNA939370 82 816 3.998696 32.62935936 Prototheca wickerhamii 3111 Plants Plants 93.5 4.83e-14   NTclustered gi|14212|emb|X68722.1| 3111 g55 i0 89.333 4.9031862745098 75 7 9 1 167 241 318 391 P.wickerhamii mitochondrial gene for large ribosomal RNA blastn 4001 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
6017859 6017859 PRJNA939370_S_NODE_3005_length_164_cov_1.217391_g2953_i0 PRJNA939370 3005 164 1.217391 1.99652124 Pseudochlorella signiensis 173497 Plants Plants 237 3.52e-58   NTclustered gi|725650714|ref|NC_025529.1| 173497 g2953 i0 92.727 145.30487804878 165 11 100 1 1 164 151181 151017 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 23830 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
9842665 9842665 PRJNA939370_S_NODE_2128_length_188_cov_1.100719_g2076_i0 PRJNA939370 2128 188 1.100719 2.06935172 Stichococcus bacillaris 37433 Plants Plants 122 1.2099999999999999e-23   NTclustered gi|371782130|emb|HE610162.1| 37433 g2076 i0 89.583 58.5851063829787 96 10 51 0 93 188 1039 944 Stichococcus bacillaris plastid partial 23S rRNA gene, strain SAG 379-2 blastn 11014 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
24207718 24207718 PRJNA939370_S_NODE_1259_length_247_cov_2.535354_g1207_i0 PRJNA939370 1259 247 2.535354 6.26232438 Eukaryota 2759 Plants Plants 313 9.28e-81   NTclustered gi|2316813204|gb|OP643786.1| 3079 g1207 i0 99.419 70.331983805668 172 1 70 0 76 247 681 510 Chlorella sp. isolate NTBN_1 small subunit ribosomal RNA gene, partial sequence blastn 17372 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;