RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939369 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12393700 12393700 PRJNA939369_S_NODE_6290_length_499_cov_3.204225_g5873_i0 PRJNA939369 6290 499 3.204225 15.98908275 Desulfovibrio fairfieldensis 44742 Bacteria Bacteria 706 0   NTclustered gi|987453195|gb|CP014229.1| 44742 g5873 i0 92.354 342.563126252505 497 36 99 2 1 496 164981 165476 Desulfovibrio fairfieldensis strain CCUG 45958 chromosome, complete genome blastn 170939 706 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fairfieldensis
17492462 17492462 PRJNA939369_S_NODE_10054_length_423_cov_2.582857_g9637_i0 PRJNA939369 10054 423 2.582857 10.92548511 Desulfovibrio fairfieldensis 44742 Bacteria Bacteria 573 7.029999999999997e-159   NTclustered gi|987453195|gb|CP014229.1| 44742 g9637 i0 91.429 436.754137115839 420 32 99 4 1 418 165110 165527 Desulfovibrio fairfieldensis strain CCUG 45958 chromosome, complete genome blastn 184747 573 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fairfieldensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;