RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA939369 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2189535 2189535 PRJNA939369_S_NODE_10902_length_412_cov_1.902655_g10485_i0 PRJNA939369 10902 412 1.902655 7.8389386 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.04   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10485 i0 100 0.0679611650485437 28 0 7 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20382433 20382433 PRJNA939369_S_NODE_72896_length_242_cov_2.278107_g72479_i0 PRJNA939369 72896 242 2.278107 5.51301894 Onchocercidae 6296 Nematoda Nematoda 128 3.52e-25   NTclustered gi|1158605395|ref|XR_002251420.1| 7209 g72479 i0 96.154 23.6528925619835 78 3 32 0 1 78 2912 2989 Loa loa 28S ribosomal RNA rRNA blastn 5724 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
22591209 22591209 PRJNA939369_S_NODE_10398_length_418_cov_8.881159_g9981_i0 PRJNA939369 10398 418 8.881159 37.12324462 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.04   NTclustered gi|1557394408|emb|LR031564.1| 45931 g9981 i0 100 0.0669856459330144 28 0 7 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;