RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA939369 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2189842 2189842 PRJNA939369_S_NODE_58382_length_249_cov_1.312500_g57965_i0 PRJNA939369 58382 249 1.3125 3.268125 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 113 1.02e-20   NTclustered gi|1270519481|ref|XM_022955661.1| 5861 g57965 i0 83.2 0.502008032128514 125 19 50 2 102 225 622 499 Plasmodium yoelii heat shock protein 90, putative (PY17X_0808800), partial mRNA blastn 125 113 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
23866697 23866697 PRJNA939369_S_NODE_34399_length_289_cov_1.166667_g33982_i0 PRJNA939369 34399 289 1.166667 3.37166763 Theileria sp. 27992 SAR_Eukaryotes SAR_Eukaryotes 387 6.46e-103   NTclustered gi|1425132576|gb|MH618774.1| 27992 g33982 i0 90.722 34.80276816609 291 25 100 2 1 289 910 1200 Theileria sp. isolate P11 small subunit ribosomal RNA gene, partial sequence blastn 10058 387 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;