RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA939369 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3465191 3465191 PRJNA939369_S_NODE_41463_length_274_cov_0.786070_g41046_i0 PRJNA939369 41463 274 0.78607 2.1538318 Pyramidobacter piscolens 638849 Bacteria Bacteria 198 3.0499999999999998e-46   NTclustered gi|2188906985|dbj|AP025585.1| 638849 g41046 i0 83.256 40.521897810219 215 36 78 0 57 271 2332215 2332429 Pyramidobacter piscolens CE91-St28 DNA, complete genome blastn 11103 198 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
8908893 8908893 PRJNA939369_S_NODE_28147_length_306_cov_1.321888_g27730_i0 PRJNA939369 28147 306 1.321888 4.04497728 Deinococcus 1298 Bacteria Bacteria 527 3.8899999999999985e-145   NTclustered gi|1435316362|gb|CP031158.1| 980427 g27730 i0 97.72 216.581699346405 307 6 100 1 1 306 1792185 1791879 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 66274 527 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;