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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 24 ✖

bioproject 1

  • PRJNA939369 · 24 ✖

analysis 1

  • blastn · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1256108 1256108 PRJNA939369_S_NODE_661_length_1284_cov_12.716763_g420_i0 PRJNA939369 661 1284 12.716763 163.28323692 Deltainfluenzavirus 1511083 Viruses Viruses 2213 0   NTclustered gi|1328406500|ref|NC_036620.1| 1511083 g420 i0 99.669 93.0381619937695 1210 4 94 0 1 1210 1211 2 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 6 P42 (P42) gene, complete cds blastn 119461 2224 0.995053956834532 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
3808090 3808090 PRJNA939369_S_NODE_363_length_1768_cov_25.598820_g200_i0 PRJNA939369 363 1768 25.59882 452.5871376 Deltainfluenzavirus 1511083 Viruses Viruses 3230 0   NTclustered gi|2050655392|gb|MZ264975.1| 1511083 g200 i0 99.66 98.3964932126697 1767 6 99 0 2 1768 2 1768 Influenza D virus (D/bovine/Italy/287448/2015) segment 5 nucleocapsid protein (NP) gene, complete cds blastn 173965 3241 0.99660598580685 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
4742565 4742565 PRJNA939369_S_NODE_18844_length_344_cov_1.369004_g18427_i0 PRJNA939369 18844 344 1.369004 4.70937376 Penaeus vannamei solinvivirus 2973956 Viruses Viruses 499 9.67e-137   NTclustered gi|2304762575|gb|OP265432.1| 2973956 g18427 i0 93.003 30.2122093023256 343 22 99 2 1 342 342 1 Penaeus vannamei solinvivirus isolate 20-905-APL polyprotein gene, complete cds blastn 10393 499 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Solinviviridae   Penaeus vannamei solinvivirus
4742917 4742917 PRJNA939369_S_NODE_68384_length_245_cov_0.877907_g67967_i0 PRJNA939369 68384 245 0.877907 2.15087215 Betacoronavirus pandemicum 3418604 Viruses Viruses 63.9 1.02e-5   NTclustered gi|2557634435|emb|OY691424.1| 2697049 g67967 i0 97.297 14.9102040816327 37 1 15 0 209 245 7552 7588 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3653 63.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5084345 5084345 PRJNA939369_S_NODE_1544_length_862_cov_34.152091_g1198_i0 PRJNA939369 1544 862 34.152091 294.39102442 Deltainfluenzavirus 1511083 Viruses Viruses 1580 0   NTclustered gi|1328406502|ref|NC_036621.1| 1511083 g1198 i0 99.768 99.1786542923434 861 2 99 0 1 861 861 1 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 7 nonstructural protein 2 (NS2) and nonstructural protein 1 (NS1) genes, complete cds blastn 85492 1580 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
8908891 8908891 PRJNA939369_S_NODE_267_length_2041_cov_12.819614_g130_i0 PRJNA939369 267 2041 12.819614 261.64832174 Deltainfluenzavirus 1511083 Viruses Viruses 3716 0   NTclustered gi|1847502554|gb|MT349585.1| 1511083 g130 i0 99.51 98.5188633023028 2041 10 100 0 1 2041 2041 1 Influenza D virus (D/bovine/Italy/188812-1/2017) hemagglutinin-esterase gene, complete cds blastn 201077 3718 0.999462076385153 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
9842171 9842171 PRJNA939369_S_NODE_10288_length_420_cov_1.832853_g9871_i0 PRJNA939369 10288 420 1.832853 7.6979826 Picobirnavirus sp. 1907787 Viruses Viruses 339 2.77e-88   NTclustered gi|2071757898|gb|MW930290.1| 1907787 g9871 i0 81.598 5.15238095238095 413 73 98 3 10 420 1150 1561 MAG: Picobirnavirus sp. isolate XZ28 RNA-dependent RNA-polymerase gene, complete cds blastn 2164 339 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae Orthopicobirnavirus Picobirnavirus sp.
11118266 11118266 PRJNA939369_S_NODE_75549_length_241_cov_0.958333_g75132_i0 PRJNA939369 75549 241 0.958333 2.30958253 Betacoronavirus pandemicum 3418604 Viruses Viruses 122 1.6299999999999994e-23   NTclustered gi|2165834194|emb|OV195900.1| 2697049 g75132 i0 96.053 29.8132780082988 76 1 31 2 5 79 30066 29992 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 7185 122 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12393364 12393364 PRJNA939369_S_NODE_10710_length_414_cov_3.533724_g10293_i0 PRJNA939369 10710 414 3.533724 14.62961736 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.003   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g10293 i0 100 0.140096618357488 30 0 7 0 385 414 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
13668039 13668039 PRJNA939369_S_NODE_49491_length_259_cov_0.994624_g49074_i0 PRJNA939369 49491 259 0.994624 2.57607616 Betacoronavirus pandemicum 3418604 Viruses Viruses 62.1 3.92e-5   NTclustered gi|2557633336|emb|OY694998.1| 2697049 g49074 i0 97.222 1.78378378378378 36 1 14 0 7 42 19685 19650 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 462 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14010035 14010035 PRJNA939369_S_NODE_211_length_2346_cov_12.398592_g90_i0 PRJNA939369 211 2346 12.398592 290.87096832 Deltainfluenzavirus 1511083 Viruses Viruses 4294 0   NTclustered gi|1328406492|ref|NC_036616.1| 1511083 g90 i0 99.702 99.5618073316283 2346 7 100 0 1 2346 12 2357 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 1 polymerase PB2 (PB2) gene, complete cds blastn 233572 4316 0.994902687673772 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
17492562 17492562 PRJNA939369_S_NODE_24554_length_318_cov_1.800000_g24137_i0 PRJNA939369 24554 318 1.8 5.724 Porcine picobirnavirus 442302 Viruses Viruses 278 4.52e-70   NTclustered gi|2095880661|gb|MW978536.1| 442302 g24137 i0 88.938 63.2421383647799 226 24 71 1 1 225 2667 2892 MAG: Porcine picobirnavirus isolate 15217_NODE_84_len_2958_cov_626.749569 hypothetical protein and capsid protein-like gene, partial sequence blastn 20111 278 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae Orthopicobirnavirus Porcine picobirnavirus
20041025 20041025 PRJNA939369_S_NODE_42016_length_272_cov_2.216080_g41599_i0 PRJNA939369 42016 272 2.21608 6.0277376 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g41599 i0 100 0.213235294117647 30 0 11 0 243 272 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
21316247 21316247 PRJNA939369_S_NODE_13997_length_379_cov_1.258170_g13580_i0 PRJNA939369 13997 379 1.25817 4.7684643 Stralarivirus lychnis 3052754 Viruses Viruses 281 4.23e-71   NTclustered gi|2500669232|ref|NC_078686.1| 1676256 g13580 i0 82.5 3.83641160949868 320 56 84 0 19 338 1146 827 Lychnis mottle virus isolate Andong segment RNA2, complete sequence blastn 1454 281 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Stralarivirus Stralarivirus lychnis
21316524 21316524 PRJNA939369_S_NODE_55577_length_251_cov_0.865169_g55160_i0 PRJNA939369 55577 251 0.865169 2.17157419 Betacoronavirus pandemicum 3418604 Viruses Viruses 126 1.32e-24   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g55160 i0 96.154 28.9043824701195 78 1 30 2 2 77 30068 29991 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 7255 126 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21316570 21316570 PRJNA939369_S_NODE_61757_length_248_cov_0.880000_g61340_i0 PRJNA939369 61757 248 0.88 2.1824 Orthoflavivirus denguei 3052464 Viruses Viruses 52.8 0.022   NTclustered gi|2126762592|gb|OL314736.1| 11070 g61340 i0 100 0.67741935483871 28 0 11 0 57 84 9735 9762 Dengue virus 4 isolate JBB-007, complete genome blastn 168 52.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Orthoflavivirus Orthoflavivirus denguei
21316707 21316707 PRJNA939369_S_NODE_79837_length_213_cov_12.328571_g79420_i0 PRJNA939369 79837 213 12.328571 26.25985623 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g79420 i0 100 0.7981220657277 29 0 14 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 170 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
22591253 22591253 PRJNA939369_S_NODE_18578_length_345_cov_17.915441_g18161_i0 PRJNA939369 18578 345 17.915441 61.80827145 Carlavirus latensdianthi 3427766 Viruses Viruses 56.5 0.003   NTclustered gi|1995060321|gb|MN450069.1| 12164 g18161 i0 94.444 0.510144927536232 36 2 10 0 310 345 48 13 Carnation latent virus isolate KL, complete genome blastn 176 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
23866633 23866633 PRJNA939369_S_NODE_20759_length_334_cov_1.555556_g20342_i0 PRJNA939369 20759 334 1.555556 5.19555704 Penaeus vannamei solinvivirus 2973956 Viruses Viruses 484 2.6199999999999996e-132   NTclustered gi|2304762575|gb|OP265432.1| 2973956 g20342 i0 92.814 30.3023952095808 334 24 100 0 1 334 4008 3675 Penaeus vannamei solinvivirus isolate 20-905-APL polyprotein gene, complete cds blastn 10121 484 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Solinviviridae   Penaeus vannamei solinvivirus
24207627 24207627 PRJNA939369_S_NODE_219_length_2316_cov_13.310299_g94_i0 PRJNA939369 219 2316 13.310299 308.26652484 Deltainfluenzavirus 1511083 Viruses Viruses 4261 0   NTclustered gi|1707337734|gb|MN165245.1| 1511083 g94 i0 99.87 99.5034542314335 2316 3 100 0 1 2316 2322 7 Influenza D virus (D/bovine/Italy/12002-1/2018) segment 2 polymerase PB1 (PB1) gene, complete cds blastn 230450 4272 0.997425093632959 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
24207631 24207631 PRJNA939369_S_NODE_239_length_2188_cov_13.160757_g109_i0 PRJNA939369 239 2188 13.160757 287.95736316 Deltainfluenzavirus 1511083 Viruses Viruses 3988 0   NTclustered gi|1328406498|ref|NC_036619.1| 1511083 g109 i0 99.588 98.8423217550274 2186 9 99 0 3 2188 2 2187 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 3 polymerase 3 (P3) gene, complete cds blastn 216267 4026 0.990561351217089 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
25140423 25140423 PRJNA939369_S_NODE_28400_length_305_cov_2.383621_g27983_i0 PRJNA939369 28400 305 2.383621 7.27004405 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.008   NTclustered gi|1995060321|gb|MN450069.1| 12164 g27983 i0 100 0.462295081967213 29 0 10 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
25140545 25140545 PRJNA939369_S_NODE_48840_length_260_cov_1.053476_g48423_i0 PRJNA939369 48840 260 1.053476 2.7390376 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 8.28e-22   NTclustered gi|2165837646|emb|OV197539.1| 2697049 g48423 i0 93.671 34.55 79 3 30 2 3 80 29948 29871 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8983 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25482569 25482569 PRJNA939369_S_NODE_11000_length_411_cov_1.594675_g10583_i0 PRJNA939369 11000 411 1.594675 6.55411425 Viruses 10239 Viruses Viruses 477 5.4999999999999985e-130   NTclustered gi|2677147979|gb|OR996055.1| 2665152 g10583 i0 87.99 60.1849148418491 408 44 99 5 4 408 3713 3308 MAG: Cnidium vein yellowing virus isolate Jinan segment RNA2, complete sequence blastn 24736 477 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Cnidium vein yellowing virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;