RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA939369" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA939369 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11118097 11118097 PRJNA939369_S_NODE_5349_length_529_cov_9.256579_g4933_i0 PRJNA939369 5349 529 9.256579 48.96730291 Tritrichomonas sp. 2185286 Parabasalia other_Eukaryota 856 0   NTclustered gi|1696259911|gb|MN120899.1| 2185286 g4933 i0 96.038 100.812854442344 530 14 100 5 1 529 890 1413 Tritrichomonas sp. strain LL5 small subunit ribosomal RNA gene, partial sequence blastn 53330 856 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas sp.
12393458 12393458 PRJNA939369_S_NODE_270_length_2031_cov_29.136874_g133_i0 PRJNA939369 270 2031 29.136874 591.76991094 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 3193 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g133 i0 95.205 24.1161989167898 2023 92 99 4 1 2022 298 2316 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 48980 3193 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
16558540 16558540 PRJNA939369_S_NODE_1193_length_964_cov_21.754209_g877_i0 PRJNA939369 1193 964 21.754209 209.71057476 Tritrichomonas 5723 Parabasalia other_Eukaryota 1515 0   NTclustered gi|62466089|gb|AY886846.1| 5726 g877 i0 95.507 99.3827800829876 957 28 99 10 1 951 948 1 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 95805 1515 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
23866626 23866626 PRJNA939369_S_NODE_20239_length_336_cov_18.406844_g19822_i0 PRJNA939369 20239 336 18.406844 61.84699584 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 425 1.62e-114   NTclustered gi|2274983416|gb|OP038912.1| 5725 g19822 i0 89.614 35.7113095238095 337 31 99 4 1 335 24 358 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 11999 425 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
25140472 25140472 PRJNA939369_S_NODE_36760_length_283_cov_12.819048_g36343_i0 PRJNA939369 36760 283 12.819048 36.27790584 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 372 1.76e-98   NTclustered gi|2274983416|gb|OP038912.1| 5725 g36343 i0 91.007 4.81978798586572 278 21 98 4 6 283 2675 2402 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 1364 372 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;