RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA938397" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Viruses · 3 ✖

bioproject 1

  • PRJNA938397 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7634145 7634145 PRJNA938397_S_NODE_41826_length_170_cov_1.541353_g41585_i0 PRJNA938397 41826 170 1.541353 2.6203001 Megavirus 3044761 Viruses Viruses 71.3 3.92e-8   NTclustered gi|2500352667|ref|NC_075034.1| 1842663 g41585 i0 95.455 3.18235294117647 44 2 26 0 109 152 326164 326207 Powai lake megavirus isolate 1, complete genome blastn 541 71.3 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Megavirus Megavirus powaiense
22590421 22590421 PRJNA938397_S_NODE_37858_length_179_cov_1.781690_g37617_i0 PRJNA938397 37858 179 1.78169 3.1892251 Bromovirus BMV 3427622 Viruses Viruses 326 8.09e-85   NTclustered gi|2329659869|gb|OK558648.1| 12302 g37617 i0 100 32.4469273743017 176 0 98 0 1 176 1194 1019 Brome mosaic virus isolate VRS-315 ORF1 and ORF2 genes, complete cds blastn 5808 326 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
25139252 25139252 PRJNA938397_S_NODE_30820_length_199_cov_1.975309_g30579_i0 PRJNA938397 30820 199 1.975309 3.93086491 Bacteriophage sp. 38018 Viruses Viruses 52.8 0.017   NTclustered gi|2056797228|tpg|BK057247.1| 38018 g30579 i0 100 0.14070351758794 28 0 14 0 1 28 42114 42087 MAG TPA_asm: Bacteriophage sp. isolate ctXuM5, partial genome blastn 28 52.8 1 Viruses               Bacteriophage sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;