RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA938397" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA938397 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4740749 4740749 PRJNA938397_S_NODE_13144_length_300_cov_8.901141_g12903_i0 PRJNA938397 13144 300 8.901141 26.703423 Strongyloides ratti 34506 Nematoda Nematoda 139 2.08e-28   NTclustered gi|1376143465|ref|XM_024652112.1| 34506 g12903 i0 79.803 1.52666666666667 203 31 66 9 88 285 360 163 Strongyloides ratti Histone H2B family and Histone core domain and Histone-fold domain-containing protein (SRAE_2000119000), partial mRNA blastn 458 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
7291816 7291816 PRJNA938397_S_NODE_44466_length_164_cov_6.598425_g44225_i0 PRJNA938397 44466 164 6.598425 10.821417 Caenorhabditis elegans 6239 Nematoda Nematoda 202 1.28e-47   NTclustered gi|1487899|emb|Z78062.1| 6239 g44225 i0 89.375 92.1463414634146 160 17 98 0 3 162 5276 5117 Caenorhabditis elegans Cosmid F16D3, complete sequence blastn 15112 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8566507 8566507 PRJNA938397_S_NODE_42227_length_169_cov_2.742424_g41986_i0 PRJNA938397 42227 169 2.742424 4.63469656 Strongyloides ratti 34506 Nematoda Nematoda 60.2 8.43e-5   NTclustered gi|1376145717|ref|XM_024653392.1| 34506 g41986 i0 91.111 0.266272189349112 45 2 25 2 60 102 161 117 Strongyloides ratti 26S proteasome regulatory complex subunit p50 (SRAE_2000233400), partial mRNA blastn 45 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22590049 22590049 PRJNA938397_S_NODE_28738_length_205_cov_86.946429_g28497_i0 PRJNA938397 28738 205 86.946429 178.24017945 Caenorhabditis elegans 6239 Nematoda Nematoda 82.4 2.28e-11   NTclustered gi|412979794|emb|FO080342.2| 6239 g28497 i0 100 4.28292682926829 44 0 41 0 162 205 32837 32880 Caenorhabditis elegans Cosmid C04F5, complete sequence blastn 878 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;