RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA938397" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA938397 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3464962 3464962 PRJNA938397_S_NODE_8823_length_351_cov_242.318471_g8582_i0 PRJNA938397 8823 351 242.318471 850.53783321 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 586 7.349999999999997e-163   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g8582 i0 96.857 82.968660968661 350 11 99 0 1 350 401 52 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 29122 586 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
3807995 3807995 PRJNA938397_S_NODE_22583_length_232_cov_10.200000_g22342_i0 PRJNA938397 22583 232 10.2 23.664 root 1 Root_unresolved Root_unresolved 370 5.04e-98   NTclustered gi|10832|emb|X54512.1| 5911 g22342 i0 97.26 80.6939655172414 219 4 94 2 3 219 8112 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18721 370 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
10184664 10184664 PRJNA938397_S_NODE_22348_length_233_cov_29.897959_g22107_i0 PRJNA938397 22348 233 29.897959 69.66224447 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 279 8.79e-71   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g22107 i0 97.006 75.7811158798283 167 4 71 1 1 166 2916 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 17657 279 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
12392170 12392170 PRJNA938397_S_NODE_27770_length_209_cov_9.552326_g27529_i0 PRJNA938397 27770 209 9.552326 19.96436134 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 307 3.54e-79   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g27529 i0 94.472 3.16746411483254 199 11 95 0 1 199 2156 1958 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 662 307 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
16215305 16215305 PRJNA938397_S_NODE_10853_length_325_cov_12.427083_g10612_i0 PRJNA938397 10853 325 12.427083 40.38801975 uncultured ciliate 187299 SAR_Eukaryotes SAR_Eukaryotes 510 4.19e-140   NTclustered gi|221185865|gb|FJ577812.1| 187299 g10612 i0 97.039 77.8646153846154 304 8 94 1 8 311 535 837 Uncultured ciliate clone Ivry08 18S ribosomal RNA gene, partial sequence blastn 25306 510 1 Eukaryota Sar   Ciliophora         uncultured ciliate
22590158 22590158 PRJNA938397_S_NODE_31458_length_196_cov_11.635220_g31217_i0 PRJNA938397 31458 196 11.63522 22.8050312 Carchesium polypinum 168244 SAR_Eukaryotes SAR_Eukaryotes 303 4.24e-78   NTclustered gi|237502266|gb|FJ810362.1| 168244 g31217 i0 98.824 83.6479591836735 170 2 87 0 15 184 659 828 Carchesium polypinum isolate CR25 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16395 303 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
24207577 24207577 PRJNA938397_S_NODE_31839_length_195_cov_8.000000_g31598_i0 PRJNA938397 31839 195 8 15.6 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 305 1.17e-78   NTclustered gi|1837628855|gb|MN158348.1| 5909 g31598 i0 100 84.9025641025641 165 0 85 0 1 165 2798 2962 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16556 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;