RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA938397" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA938397 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11459768 11459768 PRJNA938397_S_NODE_24929_length_221_cov_4.559783_g24688_i0 PRJNA938397 24929 221 4.559783 10.07712043 Cloacibacterium 501783 Bacteria Bacteria 357 3.71e-94   NTclustered gi|1527207946|gb|CP034157.1| 237258 g24688 i0 99.49 431.995475113122 196 1 89 0 1 196 129285 129480 Cloacibacterium normanense strain NRS-1 chromosome, complete genome blastn 95471 357 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium normanense
16216962 16216962 PRJNA938397_S_NODE_53253_length_150_cov_2.787611_g53012_i0 PRJNA938397 53253 150 2.787611 4.1814165 Bacteroidales bacterium 2030927 Bacteria Bacteria 171 3.23e-38   NTclustered gi|2621717562|emb|OY775914.1| 2030927 g53012 i0 87.417 198.58666666666701 151 15 99 3 3 150 2183191 2183042 MAG: Bacteroidales bacterium isolate 7de1171c-092d-4693-a70e-3c34f944b135 genome assembly, chromosome: 1 blastn 29788 171 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
21658260 21658260 PRJNA938397_S_NODE_34177_length_188_cov_10.344371_g33936_i0 PRJNA938397 34177 188 10.344371 19.44741748 Dokdonia 326319 Bacteria Bacteria 224 3.23e-54   NTclustered gi|332168736|gb|CP002528.1| 983548 g33936 i0 88.298 290.835106382979 188 21 100 1 1 188 2386508 2386322 Dokdonia sp. 4H-3-7-5 chromosome, complete genome blastn 54677 224 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia sp. 4H-3-7-5
24207573 24207573 PRJNA938397_S_NODE_25399_length_219_cov_3.884615_g25158_i0 PRJNA938397 25399 219 3.884615 8.50730685 Bacteria 2 Bacteria Bacteria 209 1.09e-49   NTclustered gi|921059607|gb|KP887392.1| 585402 g25158 i0 85.787 371.41095890411 197 28 90 0 2 198 1372 1568 Uncultured Flammeovirgaceae bacterium clone 277_DPL 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 81339 211 0.990521327014218 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae   uncultured Flammeovirgaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;