RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA937226" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA937226 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11115560 11115560 PRJNA937226_S_NODE_26849_length_165_cov_2.241379_g26722_i0 PRJNA937226 26849 165 2.241379 3.69827535 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 52.8 0.014   NTclustered gi|2787715196|ref|XM_067329482.1| 715481 g26722 i0 100 0.418181818181818 28 0 17 0 65 92 330 357 Trypanosoma melophagium Sugar phosphate transporter domain (LSM04_000779), partial mRNA blastn 69 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
11115572 11115572 PRJNA937226_S_NODE_30209_length_156_cov_2.429907_g30082_i0 PRJNA937226 30209 156 2.429907 3.79065492 Petalomonas acorensis 2529306 Euglenozoa other_Eukaryota 233 4.2799999999999995e-57   NTclustered gi|1580982997|gb|MK564754.1| 2529306 g30082 i0 93.59 6.07051282051282 156 10 100 0 1 156 861 706 Petalomonas acorensis strain HFCC220 small subunit ribosomal RNA gene, partial sequence blastn 947 233 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas acorensis
22933632 22933632 PRJNA937226_S_NODE_9898_length_244_cov_1.671795_g9771_i0 PRJNA937226 9898 244 1.671795 4.0791798 Rhynchomonas 127149 Euglenozoa other_Eukaryota 451 1.86e-122   NTclustered gi|1996609220|gb|MW694339.1| 127150 g9771 i0 100 95.5696721311475 244 0 100 0 1 244 330 87 Rhynchomonas nasuta isolate G431 small subunit ribosomal RNA gene, partial sequence blastn 23319 451 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;