RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA934472" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934472 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
910729 910729 PRJNA934472_P_NODE_12561_length_402_cov_5.012158_g12184_i0 PRJNA934472 12561 402 5.012158 20.14887516 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 590 6.5999999999999985e-164   NTclustered gi|971146634|emb|LN879502.1| 389348 g12184 i0 93.25 118.893034825871 400 27 99 0 3 402 1250810 1250411 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 47795 590 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
911080 911080 PRJNA934472_P_NODE_30421_length_269_cov_2.377551_g30043_i0 PRJNA934472 30421 269 2.377551 6.39561219 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 497 2.63e-136   NTclustered gi|971146634|emb|LN879502.1| 389348 g30043 i0 100 116.96282527881 269 0 100 0 1 269 1251187 1251455 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 31463 497 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14009516 14009516 PRJNA934472_P_NODE_22011_length_311_cov_4.281513_g21633_i0 PRJNA934472 22011 311 4.281513 13.31550543 Candidatus Protochlamydia 282132 Bacteria Bacteria 558 1.3999999999999997e-154   NTclustered gi|971146634|emb|LN879502.1| 389348 g21633 i0 99.672 109.450160771704 305 1 98 0 7 311 2474857 2475161 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 34039 558 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
18762918 18762918 PRJNA934472_P_NODE_38415_length_242_cov_1.396450_g38037_i0 PRJNA934472 38415 242 1.39645 3.379409 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 398 2.4299999999999994e-106   NTclustered gi|971146634|emb|LN879502.1| 389348 g38037 i0 96.281 155.636363636364 242 9 100 0 1 242 1249981 1249740 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 37664 398 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
25137417 25137417 PRJNA934472_P_NODE_39860_length_230_cov_2.324841_g39482_i0 PRJNA934472 39860 230 2.324841 5.3471343 uncultured Neochlamydia sp. 212218 Bacteria Bacteria 392 1.07e-104   NTclustered gi|2486684494|gb|OQ819945.1| 212218 g39482 i0 97.391 98.7652173913043 230 6 100 0 1 230 246 17 Uncultured Neochlamydia sp. clone 538f65693b18ddfa36e71b2a2934ca5d 16S ribosomal RNA gene, partial sequence blastn 22716 392 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia uncultured Neochlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;