RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA934472" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934472 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2531179 2531179 PRJNA934472_P_NODE_20682_length_320_cov_2.530364_g20305_i0 PRJNA934472 20682 320 2.530364 8.0971648 Chthonomonas 1077265 Bacteria Bacteria 193 1.69e-44   NTclustered gi|526641997|ref|NR_103994.1| 454171 g20305 i0 81.148 151.828125 244 42 75 4 1 240 2543 2786 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 48585 193 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
11459283 11459283 PRJNA934472_P_NODE_23809_length_300_cov_7.422907_g23431_i0 PRJNA934472 23809 300 7.422907 22.268721 Candidatus Nitrosymbiomonas 2819028 Bacteria Bacteria 289 1.9499999999999996e-73   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g23431 i0 85.211 87 284 38 94 4 7 288 37382 37101 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 26100 289 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus
13664865 13664865 PRJNA934472_P_NODE_39791_length_231_cov_2.044304_g39413_i0 PRJNA934472 39791 231 2.044304 4.72234224 Armatimonadota bacterium 2033014 Bacteria Bacteria 259 1.13e-64   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g39413 i0 87.124 121.463203463203 233 24 99 6 1 230 2409699 2409470 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 28058 259 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
17833075 17833075 PRJNA934472_P_NODE_26114_length_288_cov_1.986047_g25736_i0 PRJNA934472 26114 288 1.986047 5.71981536 Chthonomonas 1077265 Bacteria Bacteria 213 1.15e-50   NTclustered gi|2874254000|emb|OY970325.1| 157466 g25736 i0 83.772 18.1909722222222 228 33 78 2 11 236 1305529 1305754 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 5239 213 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;