RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934332 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
910643 910643 PRJNA934332_P_NODE_6541_length_268_cov_1.282051_g6454_i0 PRJNA934332 6541 268 1.282051 3.43589668 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 78.7 4.05e-10   NTclustered gi|2225500096|gb|CP095464.1| 2026799 g6454 i0 95.833 2.27238805970149 48 2 18 0 134 181 853476 853429 MAG: Verrucomicrobia bacterium isolate LL51 chromosome, complete genome blastn 609 78.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
17488924 17488924 PRJNA934332_P_NODE_7854_length_250_cov_0.870056_g7767_i0 PRJNA934332 7854 250 0.870056 2.17514 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 296 9.47e-76   NTclustered gi|2874253690|emb|OY969416.1| 412056 g7767 i0 88.048 26.208 251 28 100 2 1 250 1315177 1315426 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 6552 296 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18762310 18762310 PRJNA934332_P_NODE_7115_length_257_cov_1.695652_g7028_i0 PRJNA934332 7115 257 1.695652 4.35782564 Pedosphaera parvula 1032527 Bacteria Bacteria 337 5.759999999999998e-88   NTclustered gi|183579829|emb|AM905426.1| 320771 g7028 i0 90.272 9.94163424124514 257 25 100 0 1 257 846 1102 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 2555 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;