contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_phylum = "Oomycota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3461467 | 3461467 | PRJNA934332_P_NODE_10583_length_243_cov_0.905882_g10496_i0 | PRJNA934332 | 10583 | 243 | 0.905882 | 2.20129326 | Plectospira myriandra | 100863 | SAR_Eukaryotes | SAR_Eukaryotes | 182 | 2.68e-41 | NTclustered | gi|57903345|gb|AY729823.1| | 100863 | g10496 | i0 | 82.297 | 86.1069958847737 | 209 | 37 | 86 | 0 | 13 | 221 | 694 | 902 | Plectospira myriandra beta-tubulin gene, partial cds | blastn | 20924 | 182 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Plectospira | Plectospira myriandra | ||
| 3807474 | 3807474 | PRJNA934332_P_NODE_9483_length_246_cov_0.890173_g9396_i0 | PRJNA934332 | 9483 | 246 | 0.890173 | 2.18982558 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 163 | 9.84e-36 | NTclustered | gi|2795045662|ref|XM_067939157.1| | 4785 | g9396 | i0 | 92.174 | 38.6666666666667 | 115 | 9 | 47 | 0 | 132 | 246 | 23 | 137 | Phytophthora cinnamomi ribonucleoprotein-associated protein (IUM83_14412), partial mRNA | blastn | 9512 | 163 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 6013877 | 6013877 | PRJNA934332_P_NODE_6865_length_262_cov_1.322751_g6778_i0 | PRJNA934332 | 6865 | 262 | 1.322751 | 3.46560762 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 172 | 1.76e-38 | NTclustered | gi|675199790|ref|XM_008910532.1| | 761204 | g6778 | i0 | 82.653 | 0.748091603053435 | 196 | 32 | 74 | 2 | 2 | 196 | 1081 | 1275 | Phytophthora parasitica INRA-310 T-complex protein 1, epsilon subunit mRNA | blastn | 196 | 172 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 7288692 | 7288692 | PRJNA934332_P_NODE_10066_length_244_cov_0.900585_g9979_i0 | PRJNA934332 | 10066 | 244 | 0.900585 | 2.1974274 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 165 | 2.71e-36 | NTclustered | gi|2795040748|ref|XM_067932530.1| | 4785 | g9979 | i0 | 79.654 | 10.4139344262295 | 231 | 45 | 94 | 2 | 1 | 230 | 2 | 231 | Phytophthora cinnamomi ABC transporter E family member 2 (IUM83_08175), partial mRNA | blastn | 2541 | 165 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 7633545 | 7633545 | PRJNA934332_P_NODE_11446_length_236_cov_2.361963_g11359_i0 | PRJNA934332 | 11446 | 236 | 2.361963 | 5.57423268 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 139 | 1.58e-28 | NTclustered | gi|23394393|gb|AF424661.1| | 4787 | g11359 | i0 | 83.553 | 2.8135593220339 | 152 | 21 | 64 | 4 | 48 | 197 | 139 | 288 | Phytophthora infestans clone MY-10-D-12 cystathionine beta-synthase mRNA, complete cds | blastn | 664 | 139 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora infestans | ||
| 9838582 | 9838582 | PRJNA934332_P_NODE_2208_length_416_cov_2.402332_g2121_i0 | PRJNA934332 | 2208 | 416 | 2.402332 | 9.99370112 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 237 | 1.03e-57 | NTclustered | gi|813142527|ref|XM_012343931.1| | 695850 | g2121 | i0 | 77.358 | 26.3581730769231 | 424 | 81 | 99 | 15 | 1 | 415 | 654 | 237 | Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA | blastn | 10965 | 237 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 12734854 | 12734854 | PRJNA934332_P_NODE_750_length_693_cov_2.129032_g670_i0 | PRJNA934332 | 750 | 693 | 2.129032 | 14.75419176 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 326 | 3.69e-84 | NTclustered | gi|156987613|gb|EU079765.1| | 67594 | g670 | i0 | 78.302 | 62.8917748917749 | 530 | 94 | 75 | 16 | 124 | 641 | 821 | 301 | Phytophthora syringae isolate PD_00013(P10332) translation elongation factor 1-alpha (EF1A) gene, partial cds | blastn | 43584 | 326 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora syringae | ||
| 14938520 | 14938520 | PRJNA934332_P_NODE_4312_length_317_cov_0.946721_g4225_i0 | PRJNA934332 | 4312 | 317 | 0.946721 | 3.00110557 | Phytophthora ramorum | 164328 | SAR_Eukaryotes | SAR_Eukaryotes | 165 | 3.66e-36 | NTclustered | gi|2794920874|ref|XM_067880626.1| | 164328 | g4225 | i0 | 78.439 | 85.3186119873817 | 269 | 46 | 84 | 10 | 48 | 313 | 1257 | 998 | Phytophthora ramorum Adenosylhomocysteinase (KRP23_10205), partial mRNA | blastn | 27046 | 165 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora ramorum | ||
| 22587575 | 22587575 | PRJNA934332_P_NODE_2018_length_432_cov_1.175487_g1931_i0 | PRJNA934332 | 2018 | 432 | 1.175487 | 5.07810384 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 291 | 8.12e-74 | NTclustered | gi|813142527|ref|XM_012343931.1| | 695850 | g1931 | i0 | 79.446 | 24.9930555555556 | 433 | 72 | 98 | 16 | 2 | 424 | 207 | 632 | Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA | blastn | 10797 | 291 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;