RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA934332 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7288778 7288778 PRJNA934332_P_NODE_8546_length_248_cov_1.240000_g8459_i0 PRJNA934332 8546 248 1.24 3.0752 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 200 7.569999999999999e-47   NTclustered gi|290987530|ref|XM_002676430.1| 5762 g8459 i0 84.577 12.8346774193548 201 31 81 0 4 204 192 392 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55800), mRNA blastn 3183 200 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
9838584 9838584 PRJNA934332_P_NODE_2828_length_375_cov_1.374172_g2741_i0 PRJNA934332 2828 375 1.374172 5.153145 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 56.5 0.003   NTclustered gi|2119428318|ref|XM_044701577.1| 5763 g2741 i0 100 0.08 30 0 8 0 336 365 613 584 Naegleria fowleri uncharacterized protein (FDP41_011196), partial mRNA blastn 30 56.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
12734855 12734855 PRJNA934332_P_NODE_8210_length_249_cov_0.875000_g8123_i0 PRJNA934332 8210 249 0.875 2.17875 Naegleria 5761 Heterolobosea other_Eukaryota 100 7.94e-17   NTclustered gi|2618963742|gb|OR769034.1| 5762 g8123 i0 96.667 24.7309236947791 60 2 24 0 176 235 5057 5116 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6158 100 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15283337 15283337 PRJNA934332_P_NODE_2612_length_387_cov_1.226115_g2525_i0 PRJNA934332 2612 387 1.226115 4.74506505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 182 4.519999999999999e-41   NTclustered gi|2124391176|ref|XM_044710476.1| 5763 g2525 i0 83.5 69.3049095607235 200 28 51 5 188 385 227 31 Naegleria fowleri uncharacterized protein (FDP41_006801), partial mRNA blastn 26821 182 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
21312733 21312733 PRJNA934332_P_NODE_9257_length_246_cov_1.491329_g9170_i0 PRJNA934332 9257 246 1.491329 3.66866934 Naegleria andersoni 5764 Heterolobosea other_Eukaryota 444 3.14e-120   NTclustered gi|4321709|gb|AF058283.1|AF058283 5764 g9170 i0 99.187 48.0813008130081 246 2 100 0 1 246 946 1191 Naegleria andersoni elongation factor 1 alpha (tef1) gene, partial cds blastn 11828 444 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria andersoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;