RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA934332 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8908219 8908219 PRJNA934332_P_NODE_6047_length_276_cov_1.517241_g5960_i0 PRJNA934332 6047 276 1.517241 4.18758516 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 252 2.33e-62   NTclustered gi|66820523|ref|XM_638773.1| 352472 g5960 i0 88.152 70.8550724637681 211 25 76 0 1 211 220 10 Dictyostelium discoideum AX4 hypothetical protein (act22) mRNA, complete cds blastn 19556 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22587641 22587641 PRJNA934332_P_NODE_8738_length_248_cov_0.880000_g8651_i0 PRJNA934332 8738 248 0.88 2.1824 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|375333686|gb|JN802190.1| 361077 g8651 i0 94.444 0.145161290322581 36 2 15 0 18 53 1473 1508 Tieghemostelium lacteum extracellular matrix protein (EcmA) gene, complete cds blastn 36 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
23862975 23862975 PRJNA934332_P_NODE_5439_length_287_cov_1.079439_g5352_i0 PRJNA934332 5439 287 1.079439 3.09798993 Dictyostelium discoideum 44689 Evosea other_Eukaryota 156 1.97e-33   NTclustered gi|66817211|ref|XM_637392.1| 352472 g5352 i0 90.083 10.9547038327526 121 10 42 2 168 287 184 303 Dictyostelium discoideum AX4 60S ribosomal protein L4 (rpl4) mRNA, complete cds blastn 3144 156 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
25136736 25136736 PRJNA934332_P_NODE_10200_length_244_cov_0.900585_g10113_i0 PRJNA934332 10200 244 0.900585 2.1974274 Physarum cinereum 289951 Evosea other_Eukaryota 444 3.11e-120   NTclustered gi|374255699|emb|HE614599.1| 289951 g10113 i0 99.59 81.266393442623 244 0 100 1 1 244 857 1099 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 19829 444 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;