RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA934332 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3461479 3461479 PRJNA934332_P_NODE_1283_length_533_cov_1.080435_g1198_i0 PRJNA934332 1283 533 1.080435 5.75871855 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 246 2.2399999999999998e-60   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g1198 i0 76.667 56.53095684803 480 91 88 17 61 531 1893 1426 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 30131 246 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3461480 3461480 PRJNA934332_P_NODE_1303_length_528_cov_3.039560_g1218_i0 PRJNA934332 1303 528 3.03956 16.0488768 Ripella sp. 805 1217113 Discosea other_Eukaryota 798 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1218 i0 94.162 100.80303030303 531 20 100 10 1 528 526 4 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 53224 798 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
6013824 6013824 PRJNA934332_P_NODE_165_length_1344_cov_5.530291_g132_i0 PRJNA934332 165 1344 5.530291 74.32711104 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 342 7.289999999999999e-89   NTclustered gi|300078498|gb|GU001160.1| 5755 g132 i0 81.754 274.386904761905 422 65 64 10 1 414 4886 4469 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 368776 342 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6359476 6359476 PRJNA934332_P_NODE_8705_length_248_cov_0.880000_g8618_i0 PRJNA934332 8705 248 0.88 2.1824 Acanthamoeba 5754 Discosea other_Eukaryota 459 1.13e-124   NTclustered gi|328751298|gb|JF437606.1| 5755 g8618 i0 100 100.467741935484 248 0 100 0 1 248 269 22 Acanthamoeba castellanii strain T17c3 18S ribosomal RNA gene, partial sequence blastn 24916 459 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13664204 13664204 PRJNA934332_P_NODE_4491_length_311_cov_1.294118_g4404_i0 PRJNA934332 4491 311 1.294118 4.02470698 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 536 6.579999999999997e-148   NTclustered gi|300078498|gb|GU001160.1| 5755 g4404 i0 97.756 16.9131832797428 312 5 100 2 1 311 7071 6761 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5260 536 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16213648 16213648 PRJNA934332_P_NODE_5633_length_283_cov_3.680952_g5546_i0 PRJNA934332 5633 283 3.680952 10.41709416 Protacanthamoeba sp. GERE3 1002215 Discosea other_Eukaryota 219 2.43e-52   NTclustered gi|327391627|gb|HM363625.1| 1002215 g5546 i0 81.979 44.6855123674912 283 27 100 17 1 283 303 561 Protacanthamoeba sp. GERE3 small subunit ribosomal RNA gene, partial sequence blastn 12646 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba sp. GERE3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;