RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA934332 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4738960 4738960 PRJNA934332_P_NODE_7184_length_256_cov_1.639344_g7097_i0 PRJNA934332 7184 256 1.639344 4.19672064 Deinococcus geothermalis 68909 Bacteria Bacteria 473 4.189999999999999e-129   NTclustered gi|94554390|gb|CP000359.1| 319795 g7097 i0 100 92.859375 256 0 100 0 1 256 689854 689599 Deinococcus geothermalis DSM 11300, complete genome blastn 23772 473 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
6013876 6013876 PRJNA934332_P_NODE_685_length_722_cov_1.842835_g606_i0 PRJNA934332 685 722 1.842835 13.3052687 Trueperaceae bacterium 2026798 Bacteria Bacteria 54.7 0.02   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g606 i0 100 0.0401662049861496 29 0 4 0 455 483 4172319 4172291 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
7288767 7288767 PRJNA934332_P_NODE_7626_length_251_cov_0.865169_g7539_i0 PRJNA934332 7626 251 0.865169 2.17157419 Deinococcus geothermalis 68909 Bacteria Bacteria 398 2.5399999999999994e-106   NTclustered gi|94554390|gb|CP000359.1| 319795 g7539 i0 95.219 1 251 12 100 0 1 251 2339475 2339725 Deinococcus geothermalis DSM 11300, complete genome blastn 251 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
8908211 8908211 PRJNA934332_P_NODE_3207_length_356_cov_1.250883_g3120_i0 PRJNA934332 3207 356 1.250883 4.45314348 Deinococcus 1298 Bacteria Bacteria 586 7.469999999999998e-163   NTclustered gi|470486828|ref|NR_076782.1| 502394 g3120 i0 96.348 262.193820224719 356 13 100 0 1 356 827 1182 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 93341 586 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
9838649 9838649 PRJNA934332_P_NODE_9888_length_245_cov_0.895349_g9801_i0 PRJNA934332 9888 245 0.895349 2.19360505 Deinococcus ficus 317577 Bacteria Bacteria 54.7 0.006   NTclustered gi|1220365708|gb|CP021084.1| 317577 g9801 i0 100 0.118367346938776 29 0 12 0 103 131 134479 134507 Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence blastn 29 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
20381754 20381754 PRJNA934332_P_NODE_8196_length_249_cov_0.875000_g8109_i0 PRJNA934332 8196 249 0.875 2.17875 Deinococcus 1298 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g8109 i0 99.197 2 249 2 100 0 1 249 1611992 1612240 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 498 449 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;