RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 8 ✖

bioproject 1

  • PRJNA934332 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
910634 910634 PRJNA934332_P_NODE_5281_length_290_cov_0.921659_g5194_i0 PRJNA934332 5281 290 0.921659 2.6728111 Gammaretrovirus gibleu 3428953 Viruses Viruses 536 6.079999999999999e-148   NTclustered gi|971888245|gb|KT724047.1| 11840 g5194 i0 100 79.3172413793103 290 0 100 0 1 290 2384 2673 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 23002 536 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
7288749 7288749 PRJNA934332_P_NODE_526_length_813_cov_1.825676_g455_i0 PRJNA934332 526 813 1.825676 14.84274588 Gammaretrovirus gibleu 3428953 Viruses Viruses 1496 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g455 i0 99.877 39.559655596556 813 1 100 0 1 813 5924 6736 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 32162 1496 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
9838587 9838587 PRJNA934332_P_NODE_3128_length_360_cov_1.428571_g3041_i0 PRJNA934332 3128 360 1.428571 5.1428556 Gammaretrovirus gibleu 3428953 Viruses Viruses 665 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g3041 i0 100 20.9361111111111 360 0 100 0 1 360 8035 7676 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 7537 665 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
11114223 11114223 PRJNA934332_P_NODE_109_length_1589_cov_1.317942_g88_i0 PRJNA934332 109 1589 1.317942 20.94209838 Gammaretrovirus gibleu 3428953 Viruses Viruses 2913 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g88 i0 99.748 61.803650094399 1589 4 100 0 1 1589 3513 5101 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 98206 2913 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
12389753 12389753 PRJNA934332_P_NODE_2490_length_395_cov_1.149068_g2403_i0 PRJNA934332 2490 395 1.149068 4.5388186 Gammaretrovirus gibleu 3428953 Viruses Viruses 725 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g2403 i0 99.747 15.4430379746835 395 1 100 0 1 395 1464 1070 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 6100 725 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
12734843 12734843 PRJNA934332_P_NODE_2530_length_392_cov_0.940439_g2443_i0 PRJNA934332 2530 392 0.940439 3.6865208799999998 Betaretrovirus 140052 Viruses Viruses 719 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g2443 i0 99.745 4 392 1 100 0 1 392 7036 7427 Squirrel monkey retrovirus - HLB, complete genome blastn 1568 719 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
20037298 20037298 PRJNA934332_P_NODE_896_length_636_cov_1.275311_g814_i0 PRJNA934332 896 636 1.275311 8.11097796 Gammaretrovirus gibleu 3428953 Viruses Viruses 1170 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g814 i0 99.843 20.4245283018868 636 1 100 0 1 636 7417 6782 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 12990 1170 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
21312676 21312676 PRJNA934332_P_NODE_3457_length_346_cov_1.128205_g3370_i0 PRJNA934332 3457 346 1.128205 3.9035893 Gammaretrovirus gibleu 3428953 Viruses Viruses 640 5.4999999999999996e-179   NTclustered gi|971888245|gb|KT724047.1| 11840 g3370 i0 100 30.4190751445087 346 0 100 0 1 346 3150 3495 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 10525 640 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;