RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA934332 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11114243 11114243 PRJNA934332_P_NODE_2849_length_374_cov_1.521595_g2762_i0 PRJNA934332 2849 374 1.521595 5.6907653 Chlamydomonas incerta 51695 Plants Plants 267 1.17e-66   NTclustered gi|74272614|gb|DQ122872.1| 51695 g2762 i0 80.627 71.2540106951872 351 62 93 6 27 374 539 192 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 26649 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
12389756 12389756 PRJNA934332_P_NODE_2830_length_375_cov_1.298013_g2743_i0 PRJNA934332 2830 375 1.298013 4.86754875 Auxenochlorella protothecoides 3075 Plants Plants 121 9.65e-23   NTclustered gi|760449190|ref|XM_011403362.1| 3075 g2743 i0 82.069 1.496 145 22 38 3 173 315 282 140 Auxenochlorella protothecoides 60S ribosomal protein L35-2 partial mRNA blastn 561 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
13664184 13664184 PRJNA934332_P_NODE_1151_length_563_cov_2.524490_g1066_i0 PRJNA934332 1151 563 2.52449 14.2128787 Chlorella variabilis 554065 Plants Plants 250 1.83e-61   NTclustered gi|552841436|ref|XM_005850245.1| 554065 g1066 i0 80.878 32.3179396092362 319 59 56 2 1 318 43 360 Chlorella variabilis hypothetical protein (CHLNCDRAFT_30036) mRNA, complete cds blastn 18195 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
16213631 16213631 PRJNA934332_P_NODE_3873_length_332_cov_0.861004_g3786_i0 PRJNA934332 3873 332 0.861004 2.85853328 Monoraphidium neglectum 145388 Plants Plants 326 1.67e-84   NTclustered gi|926773841|ref|XM_014039941.1| 145388 g3786 i0 86.942 84.2078313253012 291 36 87 2 43 332 58 347 Monoraphidium neglectum 40S ribosomal protein S23 mRNA blastn 27957 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
17488867 17488867 PRJNA934332_P_NODE_1194_length_553_cov_2.287500_g1109_i0 PRJNA934332 1194 553 2.2875 12.649875 Auxenochlorella protothecoides 3075 Plants Plants 364 6.159999999999998e-96   NTclustered gi|760444702|ref|XM_011401118.1| 3075 g1109 i0 84.89 57.3236889692586 364 51 65 3 61 422 124 485 Auxenochlorella protothecoides 40S ribosomal protein S23-2 partial mRNA blastn 31700 364 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18762274 18762274 PRJNA934332_P_NODE_2195_length_417_cov_2.828488_g2108_i0 PRJNA934332 2195 417 2.828488 11.79479496 Chlamydomonas reinhardtii 3055 Plants Plants 267 1.3199999999999998e-66   NTclustered gi|2082263148|ref|XM_001693658.2| 3055 g2108 i0 78.333 46.3309352517986 420 85 100 5 1 417 634 218 Chlamydomonas reinhardtii ribosomal protein S3a (CHLRE_13g568650v5), mRNA blastn 19320 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22587587 22587587 PRJNA934332_P_NODE_3478_length_345_cov_1.841912_g3391_i0 PRJNA934332 3478 345 1.841912 6.3545964 Chlamydomonas reinhardtii 3055 Plants Plants 241 6.490000000000001e-59   NTclustered gi|2082238813|ref|XM_001701728.2| 3055 g3391 i0 80.363 6.35652173913043 331 54 94 10 17 340 228 554 Chlamydomonas reinhardtii ribosomal protein L15 (CHLRE_02g091100v5), mRNA blastn 2193 241 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23862943 23862943 PRJNA934332_P_NODE_1879_length_445_cov_1.381720_g1792_i0 PRJNA934332 1879 445 1.38172 6.148654 Monoraphidium neglectum 145388 Plants Plants 148 5.339999999999999e-31   NTclustered gi|926772141|ref|XM_014039091.1| 145388 g1792 i0 81.72 18.0314606741573 186 26 41 7 263 444 188 7 Monoraphidium neglectum hypothetical protein mRNA blastn 8024 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
23863014 23863014 PRJNA934332_P_NODE_9379_length_246_cov_0.890173_g9292_i0 PRJNA934332 9379 246 0.890173 2.18982558 Auxenochlorella protothecoides 3075 Plants Plants 182 2.72e-41   NTclustered gi|760443020|ref|XM_011400277.1| 3075 g9292 i0 95.575 0.845528455284553 113 5 46 0 1 113 59 171 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 208 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
25136814 25136814 PRJNA934332_P_NODE_8840_length_248_cov_0.880000_g8753_i0 PRJNA934332 8840 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 106 1.7e-18   NTclustered gi|2082250963|ref|XM_001692342.2| 3055 g8753 i0 91.026 0.870967741935484 78 7 31 0 166 243 697 774 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g340050v5), mRNA blastn 216 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;