RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA934332 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17488942 17488942 PRJNA934332_P_NODE_9254_length_246_cov_1.514451_g9167_i0 PRJNA934332 9254 246 1.514451 3.72554946 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 132 2.77e-26   NTclustered gi|551583694|ref|XM_005777204.1| 280463 g9167 i0 79.602 8.60569105691057 201 28 77 10 39 228 544 742 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 2117 132 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
18762276 18762276 PRJNA934332_P_NODE_2575_length_389_cov_1.281646_g2488_i0 PRJNA934332 2575 389 1.281646 4.98560294 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 259 2.04e-64   NTclustered gi|551535072|ref|XM_005756305.1| 280463 g2488 i0 78.88 33.4215938303342 393 75 100 8 1 389 1223 1611 Emiliania huxleyi CCMP1516 cell division cycle protein 48 mRNA blastn 13001 259 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
18762307 18762307 PRJNA934332_P_NODE_6795_length_263_cov_1.621053_g6708_i0 PRJNA934332 6795 263 1.621053 4.26336939 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 156 1.7800000000000002e-33   NTclustered gi|61229241|gb|AY841760.1| 2081491 g6708 i0 86.111 58.1673003802281 144 20 55 0 13 156 994 1137 Pavlova lutheri S-adenosyl-L-homocysteine hydrolase (sahh) mRNA, partial cds blastn 15298 156 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;