RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA934332" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA934332 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3461513 3461513 PRJNA934332_P_NODE_583_length_769_cov_1.915230_g508_i0 PRJNA934332 583 769 1.91523 14.7281187 Thecamonas trahens 529818 Root_unresolved Root_unresolved 335 6.839999999999999e-87   NTclustered gi|923126576|ref|XM_013901301.1| 461836 g508 i0 79.596 41.6514954486346 495 80 63 18 267 749 1150 665 Thecamonas trahens ATCC 50062 S-adenosylmethionine synthase (AMSG_06698), mRNA blastn 32030 335 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18762293 18762293 PRJNA934332_P_NODE_4555_length_309_cov_1.631356_g4468_i0 PRJNA934332 4555 309 1.631356 5.04089004 Thecamonas trahens 529818 Root_unresolved Root_unresolved 139 2.15e-28   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g4468 i0 84.028 1.19417475728155 144 23 47 0 123 266 147 290 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 369 139 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21312667 21312667 PRJNA934332_P_NODE_1977_length_435_cov_1.395028_g1890_i0 PRJNA934332 1977 435 1.395028 6.0683718 Thecamonas trahens 529818 Root_unresolved Root_unresolved 289 2.94e-73   NTclustered gi|923137048|ref|XM_013906535.1| 461836 g1890 i0 82.919 13.4942528735632 322 53 74 2 108 428 90 410 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_01386), mRNA blastn 5870 289 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22587571 22587571 PRJNA934332_P_NODE_1378_length_516_cov_1.979684_g1293_i0 PRJNA934332 1378 516 1.979684 10.21516944 Thecamonas trahens 529818 Root_unresolved Root_unresolved 383 1.5799999999999996e-101   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g1293 i0 80.639 15.7887596899225 501 91 97 6 4 501 498 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 8147 383 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;