RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA931595" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA931595 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2530640 2530640 PRJNA931595_P_NODE_5322_length_341_cov_1.723881_g5213_i0 PRJNA931595 5322 341 1.723881 5.87843421 Pendulispora 3375062 Bacteria Bacteria 501 2.66e-137   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g5213 i0 93.255 161.431085043988 341 22 100 1 1 341 7191285 7191624 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 55048 503 0.996023856858847 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
6012801 6012801 PRJNA931595_P_NODE_12585_length_250_cov_0.870056_g12476_i0 PRJNA931595 12585 250 0.870056 2.17514 Cystobacter fuscus 43 Bacteria Bacteria 156 1.68e-33   NTclustered gi|2579656172|gb|CP043491.1| 43 g12476 i0 82.584 18.012 178 29 71 2 1 177 9673896 9674072 Cystobacter fuscus strain Cbf 10 chromosome, complete genome blastn 4503 156 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
7287686 7287686 PRJNA931595_P_NODE_13846_length_246_cov_0.976879_g13737_i0 PRJNA931595 13846 246 0.976879 2.40312234 Pendulispora rubella 2741070 Bacteria Bacteria 267 7.289999999999999e-67   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g13737 i0 86.345 522.426829268293 249 29 100 5 1 246 7289992 7289746 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 128517 267 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
14937424 14937424 PRJNA931595_P_NODE_10352_length_269_cov_1.571429_g10243_i0 PRJNA931595 10352 269 1.571429 4.22714401 Pendulispora brunnea 2905690 Bacteria Bacteria 84.2 8.74e-12   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g10243 i0 86.667 0.278810408921933 75 10 28 0 192 266 11484885 11484811 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 75 84.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;