RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA931595" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA931595 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7633074 7633074 PRJNA931595_P_NODE_10506_length_268_cov_1.369231_g10397_i0 PRJNA931595 10506 268 1.369231 3.66953908 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 490 4.39e-134   NTclustered gi|1202132933|gb|KY435899.1| 60850 g10397 i0 99.627 99.8432835820896 268 1 100 0 1 268 1698 1431 Vorticella convallaria 18S ribosomal RNA gene, partial sequence blastn 26758 490 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
23861817 23861817 PRJNA931595_P_NODE_10139_length_271_cov_1.555556_g10030_i0 PRJNA931595 10139 271 1.555556 4.21555676 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 217 8.329999999999999e-52   NTclustered gi|116222192|gb|DQ980477.1| 407209 g10030 i0 97.619 45.7638376383764 126 3 46 0 26 151 2116 1991 Thaumatomonas sp. TMT002 large subunit ribosomal RNA gene, partial sequence blastn 12402 217 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;