RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA931595" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA931595 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
909875 909875 PRJNA931595_P_NODE_8341_length_287_cov_1.266355_g8232_i0 PRJNA931595 8341 287 1.266355 3.63443885 Didymium iridis 5793 Evosea other_Eukaryota 291 5.17e-74   NTclustered gi|2687|emb|X60210.1| 5793 g8232 i0 85.172 1.01045296167247 290 35 99 8 4 287 5526 5239 D.iridis LSU rRNA gene blastn 290 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
9837571 9837571 PRJNA931595_P_NODE_13948_length_246_cov_0.890173_g13839_i0 PRJNA931595 13948 246 0.890173 2.18982558 Physarum polycephalum 5791 Evosea other_Eukaryota 257 4.39e-64   NTclustered gi|3221|emb|V01159.1| 5791 g13839 i0 89.756 35.3170731707317 205 15 82 5 45 246 1043 1244 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 8688 257 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
13663189 13663189 PRJNA931595_P_NODE_12591_length_250_cov_0.870056_g12482_i0 PRJNA931595 12591 250 0.870056 2.17514 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 462 8.83e-126   NTclustered gi|61655689|gb|AY848965.1| 318528 g12482 i0 100 61.032 250 0 100 0 1 250 160 409 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 15258 462 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata
21311620 21311620 PRJNA931595_P_NODE_11777_length_255_cov_2.516484_g11668_i0 PRJNA931595 11777 255 2.516484 6.4170342 Tychosporium acutostipes 668358 Evosea other_Eukaryota 466 6.98e-127   NTclustered gi|256550195|gb|FJ792703.1| 668358 g11668 i0 99.608 30.1843137254902 255 1 100 0 1 255 531 785 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 7697 466 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
21311939 21311939 PRJNA931595_P_NODE_8577_length_285_cov_1.103774_g8468_i0 PRJNA931595 8577 285 1.103774 3.1457559 Vannella septentrionalis 197531 Discosea other_Eukaryota 161 4.19e-35   NTclustered gi|300078499|gb|GU001161.1| 197531 g8468 i0 80.952 40.859649122807 210 35 73 5 50 257 2295 2089 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11645 161 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;