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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA929952" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA929952 · 23 ✖

analysis 1

  • blastn · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1254773 1254773 PRJNA929952_P_NODE_18101_length_233_cov_8.352941_g16807_i0 PRJNA929952 18101 233 8.352941 19.46235253 Eukaryota 2759 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|1777704|gb|U42794.1|POU42794 4403 g16807 i0 100 99.9742489270386 233 0 100 0 1 233 862 630 Platanus occidentalis 18S ribosomal RNA gene, partial sequence blastn 23294 431 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Platanaceae Platanus Platanus occidentalis
5083118 5083118 PRJNA929952_P_NODE_3884_length_633_cov_23.476821_g2986_i0 PRJNA929952 3884 633 23.476821 148.60827693 Thismia 147077 Plants Plants 141 1.3e-28   NTclustered gi|1464923131|gb|MG008378.1| 2305413 g2986 i0 89.286 1.95734597156398 112 12 18 0 174 285 776 665 Thismia acuminata isolate Bor6/17 26S ribosomal RNA gene, partial sequence blastn 1239 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dioscoreales Thismiaceae Thismia Thismia acuminata
6012410 6012410 PRJNA929952_P_NODE_21305_length_190_cov_2.869565_g20011_i0 PRJNA929952 21305 190 2.869565 5.4521735 Lotus japonicus 34305 Plants Plants 339 1.12e-88   NTclustered gi|388505617|gb|BT141081.1| 34305 g20011 i0 98.942 37.1368421052632 189 2 99 0 2 190 276 88 Lotus japonicus clone JCVI-FLLj-20H3 unknown mRNA blastn 7056 339 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
6012431 6012431 PRJNA929952_P_NODE_6865_length_467_cov_8.408676_g1757_i1 PRJNA929952 6865 467 8.408676 39.26851692 Meryta sinclairii 46403 Plants Plants 126 2.64e-24   NTclustered gi|37778878|gb|AY189086.1| 46403 g1757 i1 86.726 0.777301927194861 113 15 24 0 218 330 1922 1810 Meryta sinclairii 26S large subunit ribosomal RNA gene, partial sequence blastn 363 126 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Araliaceae Meryta Meryta sinclairii
6358826 6358826 PRJNA929952_P_NODE_22925_length_169_cov_5.521429_g21631_i0 PRJNA929952 22925 169 5.521429 9.33121501 Magnoliopsida 3398 Plants Plants 298 1.64e-76   NTclustered gi|1721134033|emb|LR130855.1| 38872 g21631 i0 100 95.4674556213018 161 0 95 0 1 161 4113 3953 Fraxinus americana genomic DNA containing ETS-18S-ITS1-5.8S-ITS2-26S region, specimen voucher R.E. Weaver & J. Nickerson 968-79 (A) blastn 16134 300 0.993333333333333 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Fraxinus Fraxinus americana
8907604 8907604 PRJNA929952_P_NODE_22287_length_176_cov_6.469388_g20993_i0 PRJNA929952 22287 176 6.469388 11.38612288 Fraxinus 38871 Plants Plants 250 4.91e-62   NTclustered gi|1721134040|emb|LR130862.1| 38874 g20993 i0 91.579 107.744318181818 190 2 100 1 1 176 3252 3063 Fraxinus ornus genomic DNA containing ETS-18S-ITS1-5.8S-ITS2-26S region, specimen voucher Kepos 45349 (K) blastn 18963 250 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Fraxinus Fraxinus ornus
8907609 8907609 PRJNA929952_P_NODE_23047_length_168_cov_2.582734_g21753_i0 PRJNA929952 23047 168 2.582734 4.33899312 Magnoliopsida 3398 Plants Plants 311 2.11e-80   NTclustered gi|2742370619|gb|PP274534.1| 3694 g21753 i0 100 199 168 0 100 0 1 168 106754 106921 Populus trichocarpa chloroplast, complete genome blastn 33432 311 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus trichocarpa
11112775 11112775 PRJNA929952_P_NODE_12249_length_313_cov_7.665493_g10956_i0 PRJNA929952 12249 313 7.665493 23.99299309 Medicago truncatula 3880 Plants Plants 224 5.86e-54   NTclustered gi|90656477|gb|DQ455530.1| 3880 g10956 i0 91.463 6.21086261980831 164 12 52 2 7 170 22 183 Medicago truncatula cDNA-AFLP fragment BT43M22_480 sequence blastn 1944 224 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Medicago Medicago truncatula
11112820 11112820 PRJNA929952_P_NODE_7609_length_439_cov_14.968293_g6385_i0 PRJNA929952 7609 439 14.968293 65.71080627 Platanus occidentalis 4403 Plants Plants 673 0   NTclustered gi|9799460|gb|AF274662.1| 4403 g6385 i0 99.459 84.5580865603645 370 2 84 0 1 370 1868 1499 Platanus occidentalis 26S ribosomal RNA gene, complete sequence blastn 37121 673 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Platanaceae Platanus Platanus occidentalis
14008796 14008796 PRJNA929952_P_NODE_21631_length_186_cov_1.955414_g20337_i0 PRJNA929952 21631 186 1.955414 3.63707004 Eukaryota 2759 Plants Plants 69.4 1.58e-7   NTclustered gi|1767162939|gb|MN585746.1| 3144 g20337 i0 93.617 23.2956989247312 47 2 25 1 98 144 882 927 Chlorokybus atmophyticus isolate SAG 48.80 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4333 69.4 1 Eukaryota   Viridiplantae Streptophyta Chlorokybophyceae Chlorokybales Chlorokybaceae Chlorokybus Chlorokybus atmophyticus
14937111 14937111 PRJNA929952_P_NODE_19772_length_214_cov_3.962162_g18478_i0 PRJNA929952 19772 214 3.962162 8.47902668 Avellara fistulosa 1940801 Plants Plants 82.4 2.4e-11   NTclustered gi|2918392936|emb|OZ238137.1| 1940801 g18478 i0 77.059 1.72897196261682 170 21 78 14 6 171 87616021 87616176 Avellara fistulosa genome assembly, chromosome: 5 blastn 370 82.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Avellara Avellara fistulosa
14937135 14937135 PRJNA929952_P_NODE_7072_length_459_cov_22.520930_g5879_i0 PRJNA929952 7072 459 22.52093 103.3710687 Lolium perenne 4522 Plants Plants 67.6 1.59e-6   NTclustered gi|2922501898|ref|XR_007861731.2| 4522 g5879 i0 100 0.459694989106754 36 0 8 0 422 457 409 374 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC127318176), rRNA blastn 211 67.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
17487421 17487421 PRJNA929952_P_NODE_18114_length_233_cov_3.906863_g16820_i0 PRJNA929952 18114 233 3.906863 9.10299079 Cannabis sativa 3483 Plants Plants 52.8 0.021   NTclustered gi|2748540810|gb|CP158644.1| 3483 g16820 i0 100 0.240343347639485 28 0 12 0 135 162 27755581 27755608 Cannabis sativa cultivar ERBxHO40_23 chromosome 5 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
17487438 17487438 PRJNA929952_P_NODE_2394_length_777_cov_13.542781_g1757_i0 PRJNA929952 2394 777 13.542781 105.22740837 Meryta sinclairii 46403 Plants Plants 126 4.53e-24   NTclustered gi|37778878|gb|AY189086.1| 46403 g1757 i0 86.726 0.459459459459459 113 15 15 0 218 330 1922 1810 Meryta sinclairii 26S large subunit ribosomal RNA gene, partial sequence blastn 357 126 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Araliaceae Meryta Meryta sinclairii
18760765 18760765 PRJNA929952_P_NODE_17515_length_239_cov_2.285714_g16221_i0 PRJNA929952 17515 239 2.285714 5.46285646 Lotus japonicus 34305 Plants Plants 178 3.4e-40   NTclustered gi|388514026|gb|BT145281.1| 34305 g16221 i0 93.443 0.510460251046025 122 4 49 2 1 118 680 559 Lotus japonicus clone JCVI-FLLj-5K6 unknown mRNA blastn 122 178 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
20381144 20381144 PRJNA929952_P_NODE_21116_length_193_cov_2.268293_g19822_i0 PRJNA929952 21116 193 2.268293 4.37780549 Magnoliopsida 3398 Plants Plants 357 3.1499999999999996e-94   NTclustered gi|66969392|gb|DQ008804.1| 3426 g19822 i0 100 105 193 0 100 0 1 193 1343 1151 Canella winterana large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 20265 357 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Canellales Canellaceae Canella Canella winterana
22932619 22932619 PRJNA929952_P_NODE_12978_length_299_cov_5.255556_g11685_i0 PRJNA929952 12978 299 5.255556 15.71411244 Magnoliopsida 3398 Plants Plants 351 2.45e-92   NTclustered gi|9799460|gb|AF274662.1| 4403 g11685 i0 95.475 96.6755852842809 221 9 97 1 80 299 3132 3352 Platanus occidentalis 26S ribosomal RNA gene, complete sequence blastn 28906 351 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Platanaceae Platanus Platanus occidentalis
23861459 23861459 PRJNA929952_P_NODE_20059_length_209_cov_9.672222_g18765_i0 PRJNA929952 20059 209 9.672222 20.21494398 Coleochaete pulvinata 173054 Plants Plants 100 6.45e-17   NTclustered gi|992369556|gb|KU130816.1| 173054 g18765 i0 89.157 30.0717703349282 83 6 39 2 129 209 5757 5838 Coleochaete pulvinata strain 56a6 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence blastn 6285 100 1 Eukaryota   Viridiplantae Streptophyta Coleochaetophyceae Coleochaetales Coleochaetaceae Coleochaete Coleochaete pulvinata
23861465 23861465 PRJNA929952_P_NODE_23099_length_167_cov_4.913043_g21805_i0 PRJNA929952 23099 167 4.913043 8.20478181 Medicago truncatula 3880 Plants Plants 211 2.18e-50   NTclustered gi|90656068|gb|DQ455121.1| 3880 g21805 i0 90.361 41.5988023952096 166 9 99 5 2 166 9 168 Medicago truncatula cDNA-AFLP fragment BC21M12_49 sequence blastn 6947 211 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Medicago Medicago truncatula
24206372 24206372 PRJNA929952_P_NODE_11779_length_323_cov_4.578231_g10486_i0 PRJNA929952 11779 323 4.578231 14.78768613 Magnoliopsida 3398 Plants Plants 582 8.699999999999998e-162   NTclustered gi|66969353|gb|DQ008765.1| 3472 g10486 i0 99.377 113.684210526316 321 2 99 0 3 323 1044 724 Sanguinaria canadensis large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 36720 582 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ranunculales Papaveraceae Sanguinaria Sanguinaria canadensis
24206389 24206389 PRJNA929952_P_NODE_19399_length_220_cov_2.586387_g18105_i0 PRJNA929952 19399 220 2.586387 5.6900514 Macadamia 4329 Plants Plants 407 3.61e-109   NTclustered gi|2072687540|gb|MW566571.1| 4330 g18105 i0 100 130.422727272727 220 0 100 0 1 220 12584 12365 Macadamia ternifolia mitochondrion, complete genome blastn 28693 407 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Proteaceae Macadamia Macadamia ternifolia
25135280 25135280 PRJNA929952_P_NODE_11840_length_322_cov_2.784983_g10547_i0 PRJNA929952 11840 322 2.784983 8.96764526 Hordeum vulgare 4513 Plants Plants 143 1.74e-29   NTclustered gi|326496930|dbj|AK367289.1| 112509 g10547 i0 86.466 27.3167701863354 133 14 40 2 1 129 681 549 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054B13 blastn 8796 143 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25135300 25135300 PRJNA929952_P_NODE_20880_length_196_cov_2.874251_g19586_i0 PRJNA929952 20880 196 2.874251 5.63353196 Olea paniculata 126553 Plants Plants 357 3.2099999999999996e-94   NTclustered gi|2890973707|gb|OK244395.1| 126553 g19586 i0 99.49 100 196 1 100 0 1 196 3599 3794 Olea paniculata voucher P:B.C. Sen 73 (P00444406) external transcribed spacer, partial sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence blastn 19600 357 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea paniculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;