RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA929952" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA929952 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5083108 5083108 PRJNA929952_P_NODE_1844_length_867_cov_844.375895_g1326_i0 PRJNA929952 1844 867 844.375895 7320.73900965 Cetobacterium 180162 Bacteria Bacteria 1480 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g1326 i0 97.465 525.337946943483 868 20 100 2 1 867 278670 279536 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 455468 1480 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16212092 16212092 PRJNA929952_P_NODE_14053_length_280_cov_6.709163_g12760_i0 PRJNA929952 14053 280 6.709163 18.7856564 Cetobacterium somerae 188913 Bacteria Bacteria 516 7.61e-142   NTclustered gi|2850954511|gb|CP173065.1| 1319815 g12760 i0 100 492.346428571429 279 0 99 0 2 280 941304 941026 Cetobacterium somerae ATCC BAA-474 chromosome blastn 137857 516 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20035794 20035794 PRJNA929952_P_NODE_6496_length_482_cov_10.807947_g5350_i0 PRJNA929952 6496 482 10.807947 52.09430454 Cetobacterium somerae 188913 Bacteria Bacteria 852 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g5350 i0 98.75 505.172199170124 480 5 99 1 3 482 48913 49391 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 243493 852 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;