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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA929952" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 5 ✖

bioproject 1

  • PRJNA929952 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4737498 4737498 PRJNA929952_P_NODE_12704_length_304_cov_7.312727_g11411_i0 PRJNA929952 12704 304 7.312727 22.23069008 uncultured delta proteobacterium 34034 Bacteria Bacteria 300 9.16e-77   NTclustered gi|374854163|dbj|AP011765.1| 34034 g11411 i0 84.718 242.542763157895 301 45 99 1 1 301 14794 15093 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 73733 300 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
5083110 5083110 PRJNA929952_P_NODE_21204_length_191_cov_331.080247_g19910_i0 PRJNA929952 21204 191 331.080247 632.36327177 Myxococcota 2818505 Bacteria Bacteria 287 4.14e-73   NTclustered gi|343787988|gb|JN367230.1| 34034 g19910 i0 93.717 105.96335078534 191 12 100 0 1 191 1339 1149 Uncultured delta proteobacterium clone SeqSEEZ210 16S ribosomal RNA gene, partial sequence blastn 20239 287 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
10183490 10183490 PRJNA929952_P_NODE_22828_length_170_cov_6.936170_g21534_i0 PRJNA929952 22828 170 6.93617 11.791489 Bacteria 2 Bacteria Bacteria 220 3.68e-53   NTclustered gi|374854163|dbj|AP011765.1| 34034 g21534 i0 90 199.729411764706 170 17 100 0 1 170 12904 12735 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 33954 220 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11458559 11458559 PRJNA929952_P_NODE_9809_length_371_cov_156.567251_g8531_i0 PRJNA929952 9809 371 156.567251 580.86450121 Bacteria 2 Bacteria Bacteria 113 1.6e-20   NTclustered gi|18077335|emb|AJ347755.1| 34034 g8531 i0 91.463 21.5363881401617 82 7 22 0 290 371 1152 1071 Uncultured delta proteobacterium 16S rRNA gene, clone ST-12K6 blastn 7990 113 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22586156 22586156 PRJNA929952_P_NODE_3638_length_653_cov_123.445513_g2784_i0 PRJNA929952 3638 653 123.445513 806.09919989 uncultured delta proteobacterium 34034 Bacteria Bacteria 638 3.9199999999999994e-178   NTclustered gi|374854163|dbj|AP011765.1| 34034 g2784 i0 84.347 149.419601837672 658 95 100 8 1 653 13887 13233 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 97571 638 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;