RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA929952" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA929952 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6358812 6358812 PRJNA929952_P_NODE_15345_length_262_cov_23.454936_g14051_i0 PRJNA929952 15345 262 23.454936 61.45193232 Eukaryota 2759 Plants Plants 479 9.249999999999999e-131   NTclustered gi|1714003650|gb|MN243923.1| 3079 g14051 i0 99.618 100.335877862595 262 1 100 0 1 262 783 522 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 26288 479 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
9837143 9837143 PRJNA929952_P_NODE_19948_length_211_cov_6.269231_g18654_i0 PRJNA929952 19948 211 6.2692310000000004 13.22807741 Koliella corcontica 155904 Plants Plants 65.8 2.38e-6   NTclustered gi|2724824266|gb|PP746555.1| 155904 g18654 i0 90 0.374407582938389 50 5 24 0 105 154 3653 3604 Koliella corcontica culture SAG:24.84 mitochondrion, complete genome blastn 79 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica
11112777 11112777 PRJNA929952_P_NODE_13749_length_285_cov_16.687500_g12456_i0 PRJNA929952 13749 285 16.6875 47.559375 Chloromonas nivalis 201319 Plants Plants 65.8 3.38e-6   NTclustered gi|24651849|gb|AF517088.1| 201319 g12456 i0 91.667 0.336842105263158 48 3 17 1 237 284 146 192 Chloromonas nivalis strain CU563D 18S small subunit ribosomal RNA gene, partial sequence blastn 96 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas nivalis
16557321 16557321 PRJNA929952_P_NODE_20893_length_196_cov_2.269461_g19599_i0 PRJNA929952 20893 196 2.269461 4.44814356 Eukaryota 2759 Plants Plants 193 9.57e-45   NTclustered gi|371782091|emb|HE610123.1| 3107 g19599 i0 91.608 72.9591836734694 143 7 73 4 1 143 4989 5126 Hydrodictyon reticulatum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2243 blastn 14300 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;