RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA929940" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA929940 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
909141 909141 PRJNA929940_S_NODE_40081_length_175_cov_1.384058_g39846_i0 PRJNA929940 40081 175 1.384058 2.4221015 Geotrypetes seraphini 260995 Chordata Chordata 52.8 0.015   NTclustered gi|1835611722|ref|XM_033925509.1| 260995 g39846 i0 100 0.16 28 0 16 0 148 175 2191 2164 PREDICTED: Geotrypetes seraphini elongator acetyltransferase complex subunit 5 (ELP5), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
11458521 11458521 PRJNA929940_S_NODE_45789_length_166_cov_1.503876_g45554_i0 PRJNA929940 45789 166 1.503876 2.49643416 Lampetra 13103 Chordata Chordata 267 4.559999999999999e-67   NTclustered gi|2814982574|emb|OZ078585.2| 7748 g45554 i0 95.783 240.156626506024 166 5 100 2 1 165 982336 982500 Lampetra fluviatilis genome assembly, chromosome: 17 blastn 39866 267 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
12388286 12388286 PRJNA929940_S_NODE_55290_length_154_cov_2.136752_g55055_i0 PRJNA929940 55290 154 2.136752 3.29059808 Lampetra fluviatilis 7748 Chordata Chordata 244 1.94e-60   NTclustered gi|2805738660|emb|OZ078456.1| 7748 g55055 i0 95.425 144.402597402597 153 7 100 0 1 153 3721252 3721404 Lampetra fluviatilis genome assembly, chromosome: 53 blastn 22238 244 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
16212068 16212068 PRJNA929940_S_NODE_29133_length_198_cov_1.664596_g28898_i0 PRJNA929940 29133 198 1.664596 3.29590008 Polypterus senegalus 55291 Chordata Chordata 56.5 0.001   NTclustered gi|1993890913|ref|XM_039742785.1| 55291 g28898 i0 100 0.585858585858586 30 0 15 0 144 173 114 143 PREDICTED: Polypterus senegalus microtubule-associated protein 1B-like (LOC120520355), mRNA blastn 116 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
17487391 17487391 PRJNA929940_S_NODE_12334_length_275_cov_7.289916_g12099_i0 PRJNA929940 12334 275 7.289916 20.047269 Spinus spinus 160760 Chordata Chordata 54.7 0.007   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g12099 i0 94.444 0.261818181818182 36 1 13 1 229 263 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
20035730 20035730 PRJNA929940_S_NODE_31016_length_193_cov_2.378205_g30781_i0 PRJNA929940 31016 193 2.378205 4.58993565 Pteronotus mesoamericanus 1884717 Chordata Chordata 52.8 0.017   NTclustered gi|2466560394|ref|XM_054594616.1| 1884717 g30781 i0 100 0.290155440414508 28 0 15 0 78 105 1840 1867 PREDICTED: Pteronotus mesoamericanus uncharacterized LOC129087674 (LOC129087674), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Mormoopidae Pteronotus Pteronotus mesoamericanus
20035733 20035733 PRJNA929940_S_NODE_36076_length_182_cov_1.875862_g35841_i0 PRJNA929940 36076 182 1.875862 3.41406884 Bombina bombina 8345 Chordata Chordata 52.8 0.015   NTclustered gi|2445260820|ref|XM_053718804.1| 8345 g35841 i0 100 0.307692307692308 28 0 15 0 95 122 1768 1795 PREDICTED: Bombina bombina adenosine deaminase tRNA specific 3 (ADAT3), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;