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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA929922" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 6 ✖

bioproject 1

  • PRJNA929922 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8559485 8559485 PRJNA929922_P_NODE_159847_length_241_cov_1.648810_g159307_i0 PRJNA929922 159847 241 1.64881 3.9736321 Methanobrevibacter sp. AbM4 224719 Archaea Archaea 52.8 0.022   NTclustered gi|509083678|gb|CP004050.1| 224719 g159307 i0 100 0.116182572614108 28 0 12 0 134 161 1082368 1082341 Methanobrevibacter sp. AbM4, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4
14007518 14007518 PRJNA929922_P_NODE_127311_length_247_cov_1.298851_g126771_i0 PRJNA929922 127311 247 1.298851 3.20816197 Methanocaldococcus 196118 Archaea Archaea 145 3.58e-30   NTclustered gi|103488817|gb|DQ516870.1| 2190 g126771 i0 100 0.631578947368421 78 0 32 0 170 247 971 1048 Methanocaldococcus jannaschii spike-in control MJ-5000-154 genomic sequence blastn 156 145 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
14935198 14935198 PRJNA929922_P_NODE_62592_length_302_cov_1.344978_g62052_i0 PRJNA929922 62592 302 1.344978 4.06183356 Halobaculum litoreum 3031998 Archaea Archaea 54.7 0.008   NTclustered gi|2511735788|gb|CP126157.1| 3031998 g62052 i0 100 0.0960264900662252 29 0 10 0 49 77 213983 213955 Halobaculum litoreum strain DT92 plasmid unnamed, complete sequence blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum litoreum
20032488 20032488 PRJNA929922_P_NODE_124256_length_248_cov_0.880000_g123716_i0 PRJNA929922 124256 248 0.88 2.1824 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 375 1.1699999999999999e-99   NTclustered gi|937513727|gb|CP012850.1| 1353260 g123716 i0 93.952 1 248 15 100 0 1 248 1774650 1774897 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 248 375 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
22585743 22585743 PRJNA929922_S_NODE_70518_length_238_cov_10.151515_g70294_i0 PRJNA929922 70518 238 10.151515 24.1606057 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.021   NTclustered gi|323706731|gb|CP002529.1| 985053 g70294 i0 100 0.117647058823529 28 0 12 0 60 87 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
22585782 22585782 PRJNA929922_S_NODE_74198_length_206_cov_18.203008_g73974_i0 PRJNA929922 74198 206 18.203008 37.49819648 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.018   NTclustered gi|323706731|gb|CP002529.1| 985053 g73974 i0 100 0.135922330097087 28 0 14 0 156 183 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;