RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA929922" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 5 ✖

bioproject 1

  • PRJNA929922 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3458585 3458585 PRJNA929922_P_NODE_90723_length_267_cov_1.097938_g90183_i0 PRJNA929922 90723 267 1.097938 2.93149446 Persicimonas caeni 2292766 Bacteria Bacteria 80.5 1.12e-10   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g90183 i0 87.5 0.539325842696629 72 5 25 2 105 172 687524 687453 Persicimonas caeni strain YN101 chromosome blastn 144 80.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
4735166 4735166 PRJNA929922_P_NODE_18724_length_431_cov_0.843575_g18189_i0 PRJNA929922 18724 431 0.843575 3.63580825 Persicimonas caeni 2292766 Bacteria Bacteria 58.4 8.94e-4   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g18189 i0 88 0.232018561484919 50 4 11 2 288 335 687539 687490 Persicimonas caeni strain YN101 chromosome blastn 100 58.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
11111161 11111161 PRJNA929922_P_NODE_82889_length_276_cov_0.931034_g82349_i0 PRJNA929922 82889 276 0.931034 2.56965384 Persicimonas caeni 2292766 Bacteria Bacteria 71.3 7.01e-8   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g82349 i0 84.722 0.521739130434783 72 9 26 2 6 76 687454 687524 Persicimonas caeni strain YN101 chromosome blastn 144 71.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
13659574 13659574 PRJNA929922_P_NODE_127611_length_247_cov_0.931034_g127071_i0 PRJNA929922 127611 247 0.931034 2.29965398 Persicimonas caeni 2292766 Bacteria Bacteria 75 4.76e-9   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g127071 i0 86.957 0.558704453441296 69 5 27 3 119 184 687524 687457 Persicimonas caeni strain YN101 chromosome blastn 138 75 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
21309064 21309064 PRJNA929922_P_NODE_41217_length_342_cov_1.899628_g40677_i0 PRJNA929922 41217 342 1.899628 6.49672776 Persicimonas caeni 2292766 Bacteria Bacteria 75 6.9e-9   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g40677 i0 83.146 0.690058479532164 89 7 33 5 10 92 687539 687453 Persicimonas caeni strain YN101 chromosome blastn 236 75 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;