RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA929922" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA929922 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
906762 906762 PRJNA929922_P_NODE_20081_length_422_cov_0.876791_g19546_i0 PRJNA929922 20081 422 0.876791 3.70005802 Prasiola crispa 173492 Plants Plants 56.5 0.003   NTclustered gi|806639635|gb|KR017748.1| 173492 g19546 i0 96.97 0.0781990521327014 33 1 8 0 296 328 12047 12015 Prasiola crispa clone Contig1 chloroplast sequence blastn 33 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
3456876 3456876 PRJNA929922_P_NODE_130403_length_247_cov_0.885057_g129863_i0 PRJNA929922 130403 247 0.885057 2.18609079 Volvox carteri 3067 Plants Plants 54.7 0.006   NTclustered gi|302850276|ref|XM_002956620.1| 3068 g129863 i0 94.444 0.145748987854251 36 1 15 1 199 234 6062 6096 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_107323), partial mRNA blastn 36 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
3457300 3457300 PRJNA929922_P_NODE_151023_length_243_cov_0.905882_g150483_i0 PRJNA929922 151023 243 0.905882 2.20129326 Coccomyxa subellipsoidea 248742 Plants Plants 99 2.77e-16   NTclustered gi|545361910|ref|XM_005646167.1| 574566 g150483 i0 89.61 0.316872427983539 77 8 32 0 37 113 1141 1065 Coccomyxa subellipsoidea C-169 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit mRNA blastn 77 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
6011274 6011274 PRJNA929922_S_NODE_22305_length_341_cov_2.011194_g22081_i0 PRJNA929922 22305 341 2.011194 6.85817154 Desmochloris halophila 138176 Plants Plants 597 3.299999999999999e-166   NTclustered gi|371782123|emb|HE610155.1| 138176 g22081 i0 99.096 105.096774193548 332 3 97 0 10 341 3533 3202 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 35838 597 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
7285719 7285719 PRJNA929922_P_NODE_8946_length_542_cov_0.944563_g8418_i0 PRJNA929922 8946 542 0.944563 5.11953146 Trebouxia sp. SL0000003 3350044 Plants Plants 56.5 0.004   NTclustered gi|2917929628|emb|OZ234916.1| 3350044 g8418 i0 96.97 0.182656826568266 33 1 6 0 152 184 1875704 1875672 Trebouxia sp. SL0000003 genome assembly, chromosome: 11 blastn 99 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;