RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA929922" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA929922 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8558862 8558862 PRJNA929922_P_NODE_128247_length_247_cov_0.885057_g127707_i0 PRJNA929922 128247 247 0.885057 2.18609079 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 446 8.759999999999998e-121   NTclustered gi|470491270|ref|XM_004345824.1| 1257118 g127707 i0 99.19 21.3279352226721 247 2 100 0 1 247 206 452 Acanthamoeba castellanii str. Neff adenylosuccinate synthase (ACA1_182320), partial mRNA blastn 5268 446 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12385566 12385566 PRJNA929922_P_NODE_152510_length_243_cov_0.905882_g151970_i0 PRJNA929922 152510 243 0.905882 2.20129326 Physarum polycephalum 5791 Evosea other_Eukaryota 211 3.41e-50   NTclustered gi|3719262|gb|AF079798.1|AF079798 5791 g151970 i0 82.449 2.01646090534979 245 40 100 3 1 243 619 376 Physarum polycephalum apocytochrome b gene, mitochondrial gene encoding mitochondrial protein, complete cds blastn 490 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
23859141 23859141 PRJNA929922_P_NODE_2039_length_975_cov_3.888027_g1640_i0 PRJNA929922 2039 975 3.888027 37.90826325 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.027   NTclustered gi|1160554730|ref|XM_020573190.1| 670386 g1640 i0 100 0.0297435897435897 29 0 3 0 621 649 1213 1185 Polysphondylium pallidum PN500 SNF2-related domain-containing protein (ercc6), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;