RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929522 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4733792 4733792 PRJNA929522_S_NODE_624_length_791_cov_4.026462_g570_i0 PRJNA929522 624 791 4.026462 31.84931442 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 4.58e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g570 i0 81.461 30.8091024020228 178 30 22 3 84 259 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 24370 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
17483555 17483555 PRJNA929522_S_NODE_414_length_921_cov_8.425708_g371_i0 PRJNA929522 414 921 8.425708 77.60077068 Spirochaetota bacterium 2202144 Bacteria Bacteria 171 2.46e-37   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g371 i0 84.27 49.885993485342 178 25 19 3 154 329 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 45945 171 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
23857711 23857711 PRJNA929522_S_NODE_519_length_852_cov_3.191271_g371_i1 PRJNA929522 519 852 3.191271 27.18962892 Spirochaetota bacterium 2202144 Bacteria Bacteria 171 2.27e-37   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g371 i1 84.27 16.6713615023474 178 25 21 3 154 329 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 14204 171 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;