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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA929522 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
905329 905329 PRJNA929522_S_NODE_2041_length_466_cov_1.282443_g1971_i0 PRJNA929522 2041 466 1.282443 5.97618438 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 298 5.27e-76   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g1971 i0 82.37 15.5922746781116 346 58 74 3 3 347 223 566 Phytophthora sojae hypothetical protein partial mRNA blastn 7266 298 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
905343 905343 PRJNA929522_S_NODE_3841_length_345_cov_1.415441_g3771_i0 PRJNA929522 3841 345 1.415441 4.88327145 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 220 8.46e-53   NTclustered gi|695446741|ref|XM_009536267.1| 67593 g3771 i0 79.205 2.23188405797101 327 60 94 8 11 333 848 1170 Phytophthora sojae hypothetical protein partial mRNA blastn 770 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
905355 905355 PRJNA929522_S_NODE_521_length_851_cov_3.974293_g471_i0 PRJNA929522 521 851 3.974293 33.82123343 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 444 1.2099999999999994e-119   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g471 i0 78.249 70.0810810810811 731 132 85 20 120 841 316 1028 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 59639 444 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
905364 905364 PRJNA929522_S_NODE_5941_length_290_cov_1.419355_g5871_i0 PRJNA929522 5941 290 1.419355 4.1161295 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 259 1.47e-64   NTclustered gi|2794908947|ref|XM_067890725.1| 164328 g5871 i0 85.484 15.0448275862069 248 36 86 0 43 290 922 1169 Phytophthora ramorum V-type proton ATPase catalytic subunit A (KRP23_5635), partial mRNA blastn 4363 259 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
2180723 2180723 PRJNA929522_S_NODE_3122_length_379_cov_1.343137_g3052_i0 PRJNA929522 3122 379 1.343137 5.09048923 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 171 9.56e-38   NTclustered gi|813198519|ref|XM_012353453.1| 695850 g3052 i0 82.178 7.15303430079156 202 32 53 4 109 308 121 320 Saprolegnia parasitica CBS 223.65 succinate dehydrogenase iron-sulfur subunit mRNA blastn 2711 171 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4733773 4733773 PRJNA929522_S_NODE_2464_length_425_cov_1.531250_g2394_i0 PRJNA929522 2464 425 1.53125 6.5078125 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 204 1.07e-47   NTclustered gi|2795034451|ref|XM_067934743.1| 4785 g2394 i0 82.684 1.33411764705882 231 38 54 2 148 377 330 559 Phytophthora cinnamomi Eukaryotic translation initiation factor 2 subunit beta (IUM83_10251), partial mRNA blastn 567 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6008600 6008600 PRJNA929522_S_NODE_505_length_858_cov_2.078981_g457_i0 PRJNA929522 505 858 2.078981 17.83765698 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 412 3.439999999999999e-110   NTclustered gi|2795036206|ref|XM_067943759.1| 4785 g457 i0 77.954 70.8368298368298 694 129 79 19 177 858 82 763 Phytophthora cinnamomi ATP-dependent RNA helicase eIF4A (IUM83_18748), partial mRNA blastn 60778 412 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
8558238 8558238 PRJNA929522_S_NODE_1287_length_575_cov_5.868526_g1220_i0 PRJNA929522 1287 575 5.868526 33.7440245 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 302 5.1e-77   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g1220 i0 78.452 61.7217391304348 478 91 82 9 19 491 57 527 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 35490 302 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8558279 8558279 PRJNA929522_S_NODE_7087_length_270_cov_1.314721_g7017_i0 PRJNA929522 7087 270 1.314721 3.5497467 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 224 4.959999999999999e-54   NTclustered gi|166044724|emb|CU350983.1| 100861 g7017 i0 82.129 44.9333333333333 263 45 97 2 1 262 256 517 Aphanomyces euteiches cDNA blastn 12132 224 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8558284 8558284 PRJNA929522_S_NODE_7707_length_261_cov_1.228723_g7637_i0 PRJNA929522 7707 261 1.228723 3.20696703 Phytophthora insulinativitatica 2822406 SAR_Eukaryotes SAR_Eukaryotes 200 8.029999999999999e-47   NTclustered gi|1983384301|gb|MT583676.1| 2822406 g7637 i0 80.989 100.766283524904 263 41 99 7 2 261 263 7 Phytophthora insulinativitatica isolate CBS 146553 heat shock protein 90 (hsp90) gene, partial cds blastn 26300 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora insulinativitatica
9833208 9833208 PRJNA929522_S_NODE_2568_length_417_cov_2.479651_g2498_i0 PRJNA929522 2568 417 2.479651 10.34014467 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 159 2.3e-34   NTclustered gi|669160265|ref|XM_008617473.1| 1156394 g2498 i0 79.079 7.61151079136691 239 44 57 5 105 340 202 437 Saprolegnia diclina VS20 ADP-ribosylation factor 1 mRNA blastn 3174 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
11108944 11108944 PRJNA929522_S_NODE_5009_length_310_cov_1.894515_g4939_i0 PRJNA929522 5009 310 1.894515 5.8729965 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 279 1.22e-70   NTclustered gi|2794889416|ref|XM_067886769.1| 164328 g4939 i0 83.228 72.0064516129032 316 41 100 10 1 310 1179 870 Phytophthora ramorum ATP-dependent RNA helicase eIF4A (KRP23_2082), partial mRNA blastn 22322 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
12384452 12384452 PRJNA929522_S_NODE_6230_length_284_cov_3.165877_g6160_i0 PRJNA929522 6230 284 3.165877 8.99109068 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 250 8.66e-62   NTclustered gi|2794889416|ref|XM_067886769.1| 164328 g6160 i0 82.867 44.8521126760563 286 41 99 8 3 284 791 1072 Phytophthora ramorum ATP-dependent RNA helicase eIF4A (KRP23_2082), partial mRNA blastn 12738 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
14007440 14007440 PRJNA929522_S_NODE_7331_length_266_cov_2.870466_g7261_i0 PRJNA929522 7331 266 2.870466 7.63543956 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 204 6.35e-48   NTclustered gi|937408816|ref|NC_027966.1| 114742 g7261 i0 83.036 51.3345864661654 224 38 84 0 9 232 31868 32091 Pythium insidiosum mitochondrial DNA, complete genome blastn 13655 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
16208325 16208325 PRJNA929522_S_NODE_9753_length_243_cov_1.147059_g9683_i0 PRJNA929522 9753 243 1.147059 2.78735337 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 152 2.1e-32   NTclustered gi|675188148|ref|XM_008904711.1| 761204 g9683 i0 82.286 2.07818930041152 175 31 72 0 54 228 2284 2110 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 505 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
17483553 17483553 PRJNA929522_S_NODE_3554_length_357_cov_1.102113_g3484_i0 PRJNA929522 3554 357 1.102113 3.93454341 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 211 5.27e-50   NTclustered gi|2795039278|ref|XM_067938479.1| 4785 g3484 i0 79.725 47.9803921568627 291 59 82 0 67 357 97 387 Phytophthora cinnamomi iron sulfur cluster assembly protein 1 (IUM83_13781), partial mRNA blastn 17129 211 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
20031969 20031969 PRJNA929522_S_NODE_1116_length_607_cov_4.430712_g1051_i0 PRJNA929522 1116 607 4.430712 26.89442184 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 337 1.48e-87   NTclustered gi|2795029237|ref|XM_067937609.1| 4785 g1051 i0 81.951 52.1943986820428 410 63 67 8 84 487 49 453 Phytophthora cinnamomi 40S ribosomal protein S14 (IUM83_12961), partial mRNA blastn 31682 337 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21655720 21655720 PRJNA929522_S_NODE_297_length_1064_cov_2.931382_g261_i0 PRJNA929522 297 1064 2.931382 31.18990448 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 654 0   NTclustered gi|813171391|ref|XM_012349061.1| 695850 g261 i0 78.294 82.390977443609 1055 201 98 23 27 1064 1099 56 Saprolegnia parasitica CBS 223.65 adenosylhomocysteinase mRNA blastn 87664 656 0.996951219512195 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22582446 22582446 PRJNA929522_S_NODE_3978_length_340_cov_1.722846_g3908_i0 PRJNA929522 3978 340 1.722846 5.8576764 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 276 1.7499999999999998e-69   NTclustered gi|38489929|gb|AY456093.1| 4792 g3908 i0 81.525 85.7441176470588 341 57 99 4 1 338 1481 1144 Phytophthora nicotianae heat shock protein 70 (Hsp70a) gene, complete cds blastn 29153 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;