RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA929522 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7631554 7631554 PRJNA929522_S_NODE_1866_length_486_cov_2.474576_g1796_i0 PRJNA929522 1866 486 2.474576 12.02643936 Vannellidae 95227 Discosea other_Eukaryota 712 0   NTclustered gi|62865947|gb|AY929922.1| 325065 g1796 i0 93.469 101.030864197531 490 14 100 14 1 486 1660 1185 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 49101 712 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
8906237 8906237 PRJNA929522_S_NODE_5967_length_289_cov_7.958333_g5897_i0 PRJNA929522 5967 289 7.958333 22.99958237 Ripella 1217112 Discosea other_Eukaryota 431 2.94e-116   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g5897 i0 96.923 87.5882352941177 260 3 89 5 1 257 948 691 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 25313 433 0.995381062355658 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
16208312 16208312 PRJNA929522_S_NODE_793_length_705_cov_6.026899_g732_i0 PRJNA929522 793 705 6.026899 42.48963795 Ripella sp. 805 1217113 Discosea other_Eukaryota 887 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g732 i0 95.668 79.3475177304964 554 20 78 4 1 553 551 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55940 887 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
18756906 18756906 PRJNA929522_S_NODE_7835_length_259_cov_1.559140_g7765_i0 PRJNA929522 7835 259 1.55914 4.0381726 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 219 2.2e-52   NTclustered gi|470423206|ref|XM_004337526.1| 1257118 g7765 i0 81.992 36.3861003861004 261 43 100 4 1 259 481 223 Acanthamoeba castellanii str. Neff 3oxoacid CoA transferase 1 isoform 3, putative (ACA1_164100), partial mRNA blastn 9424 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;