RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929522 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9833221 9833221 PRJNA929522_S_NODE_3728_length_349_cov_1.778986_g3658_i0 PRJNA929522 3728 349 1.778986 6.20866114 Candidatus Enterococcus mangumiae 2230878 Bacteria Bacteria 52.8 0.033   NTclustered gi|2707316588|gb|CP147250.1| 2230878 g3658 i0 100 0.0802292263610315 28 0 8 0 266 293 2257289 2257262 Candidatus Enterococcus mangumiae strain DIV1094 chromosome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Candidatus Enterococcus mangumiae
12732858 12732858 PRJNA929522_S_NODE_6090_length_287_cov_1.719626_g6020_i0 PRJNA929522 6090 287 1.719626 4.93532662 root 1 Root_unresolved Root_unresolved 531 2.799999999999999e-146   NTclustered gi|1796975023|gb|CP033086.1| 1280 g6020 i0 100 98.801393728223 287 0 100 0 1 287 2463321 2463607 Staphylococcus aureus strain WH9628 chromosome blastn 28356 531 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
13658999 13658999 PRJNA929522_S_NODE_6371_length_282_cov_1.473684_g6301_i0 PRJNA929522 6371 282 1.473684 4.15578888 Bacillus paranthracis 2026186 Bacteria Bacteria 150 8.97e-32   NTclustered gi|2168785877|gb|CP089743.1| 2026186 g6301 i0 80.928 87.9929078014184 194 33 68 4 91 282 2904482 2904291 Bacillus paranthracis strain SHOU-BC01 chromosome, complete genome blastn 24814 150 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus paranthracis
16208314 16208314 PRJNA929522_S_NODE_8253_length_253_cov_2.822222_g8183_i0 PRJNA929522 8253 253 2.822222 7.14022166 Trichococcus flocculiformis 82803 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621701196|emb|OY759718.1| 82803 g8183 i0 100 0.110671936758893 28 0 11 0 130 157 1191779 1191752 MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Trichococcus Trichococcus flocculiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;