RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA929522 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3456216 3456216 PRJNA929522_S_NODE_1683_length_510_cov_2.093822_g1613_i0 PRJNA929522 1683 510 2.093822 10.6784922 Chlamydomonas reinhardtii 3055 Plants Plants 189 3.65e-43   NTclustered gi|2082255880|ref|XM_001702589.2| 3055 g1613 i0 81.702 32.7960784313725 235 35 45 8 81 311 1140 910 Chlamydomonas reinhardtii ribosomal protein L3 (CHLRE_10g417700v5), mRNA blastn 16726 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3805444 3805444 PRJNA929522_S_NODE_5443_length_300_cov_1.568282_g5373_i0 PRJNA929522 5443 300 1.568282 4.704846 Polytomella 3049 Plants Plants 84.2 9.9e-12   NTclustered gi|635557401|emb|FR668147.1| 37502 g5373 i0 81.081 1.68666666666667 111 15 37 5 69 179 1013 909 Polytomella sp. Pringsheim 198.80 mRNA for 60S acidic ribosomal protein P0 (rplP0 gene) blastn 506 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
8558263 8558263 PRJNA929522_S_NODE_4567_length_321_cov_1.512097_g4497_i0 PRJNA929522 4567 321 1.512097 4.85383137 Chlamydomonas reinhardtii 3055 Plants Plants 224 6.03e-54   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g4497 i0 81.72 12.0685358255452 279 42 85 9 49 321 505 230 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 3874 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8558272 8558272 PRJNA929522_S_NODE_6527_length_279_cov_4.480583_g6457_i0 PRJNA929522 6527 279 4.480583 12.50082657 Monoraphidium neglectum 145388 Plants Plants 126 1.49e-24   NTclustered gi|926776049|ref|XM_014041045.1| 145388 g6457 i0 92.135 0.956989247311828 89 7 32 0 133 221 89 1 Monoraphidium neglectum hypothetical protein mRNA blastn 267 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11108919 11108919 PRJNA929522_S_NODE_1749_length_500_cov_2.459016_g1679_i0 PRJNA929522 1749 500 2.459016 12.29508 Monoraphidium neglectum 145388 Plants Plants 156 3.62e-33   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g1679 i0 83.529 31.418 170 24 34 4 333 500 408 241 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 15709 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
14933278 14933278 PRJNA929522_S_NODE_6052_length_288_cov_1.432558_g5982_i0 PRJNA929522 6052 288 1.432558 4.12576704 Chlamydomonas reinhardtii 3055 Plants Plants 82.4 3.4e-11   NTclustered gi|2082265983|ref|XM_043070553.1| 3055 g5982 i0 80.357 0.388888888888889 112 18 38 4 161 270 1901 2010 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_15g637100v5), mRNA blastn 112 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14933281 14933281 PRJNA929522_S_NODE_6672_length_277_cov_1.539216_g6602_i0 PRJNA929522 6672 277 1.539216 4.26362832 Chlorella variabilis 554065 Plants Plants 178 4.029999999999999e-40   NTclustered gi|552812580|ref|XM_005843676.1| 554065 g6602 i0 81.776 2.29963898916967 214 37 77 2 64 276 141 353 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140078) mRNA, complete cds blastn 637 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
18756864 18756864 PRJNA929522_S_NODE_2435_length_427_cov_1.115819_g2365_i0 PRJNA929522 2435 427 1.115819 4.76454713 Chlamydomonas reinhardtii 3055 Plants Plants 209 2.31e-49   NTclustered gi|2082247947|ref|XM_001698013.2| 3055 g2365 i0 77.624 31.7915690866511 362 69 83 10 21 376 449 804 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g278222v5), mRNA blastn 13575 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20379777 20379777 PRJNA929522_S_NODE_1796_length_494_cov_3.282660_g1726_i0 PRJNA929522 1796 494 3.28266 16.2163404 Polytomella 3049 Plants Plants 226 2.69e-54   NTclustered gi|119416491|emb|AJ870436.1| 37502 g1726 i0 78.932 49.7125506072874 337 67 68 4 158 492 1530 1196 Polytomella sp. Pringsheim 198.80 mRNA for ATP synthase beta chain, mitochondrial precursor (atp2 gene) blastn 24558 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
22582480 22582480 PRJNA929522_S_NODE_8758_length_249_cov_1.204545_g8688_i0 PRJNA929522 8758 249 1.204545 2.99931705 Chlamydomonas incerta 51695 Plants Plants 87.9 6.18e-13   NTclustered gi|74272600|gb|DQ122865.1| 51695 g8688 i0 96.226 4.40963855421687 53 2 21 0 196 248 741 689 Chlamydomonas incerta 14-3-3-like protein-related protein mRNA, complete cds blastn 1098 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
25131501 25131501 PRJNA929522_S_NODE_6280_length_283_cov_8.342857_g6210_i0 PRJNA929522 6280 283 8.342857 23.61028531 Monoraphidium neglectum 145388 Plants Plants 198 3.1699999999999993e-46   NTclustered gi|926773841|ref|XM_014039941.1| 145388 g6210 i0 85.714 49.1342756183746 189 25 66 2 95 282 58 245 Monoraphidium neglectum 40S ribosomal protein S23 mRNA blastn 13905 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;