RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA929522 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12384447 12384447 PRJNA929522_S_NODE_5430_length_300_cov_2.436123_g5360_i0 PRJNA929522 5430 300 2.436123 7.308369 Fuerstiella marisgermanici 1891926 Bacteria Bacteria 56.5 0.002   NTclustered gi|1140105870|gb|CP017641.1| 1891926 g5360 i0 100 0.1 30 0 10 0 200 229 7205167 7205196 Fuerstiella marisgermanici strain NH11 chromosome, complete genome blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Fuerstiella Fuerstiella marisgermanici
14933286 14933286 PRJNA929522_S_NODE_7472_length_264_cov_1.612565_g7402_i0 PRJNA929522 7472 264 1.612565 4.2571716 Phycisphaerales bacterium 2052180 Bacteria Bacteria 145 3.8699999999999995e-30   NTclustered gi|2108005054|gb|CP070772.1| 2052180 g7402 i0 83.125 1.70075757575758 160 25 60 2 106 264 3895765 3895923 MAG: Phycisphaerales bacterium isolate bin220 chromosome blastn 449 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;