RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA929522 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17483543 17483543 PRJNA929522_S_NODE_1634_length_516_cov_2.097065_g1564_i0 PRJNA929522 1634 516 2.097065 10.8208554 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 141 1.05e-28   NTclustered gi|551604089|ref|XM_005783475.1| 280463 g1564 i0 75.862 7.9922480620155 290 62 55 6 27 312 662 947 Emiliania huxleyi CCMP1516 calreticulin (CRT-1), mRNA blastn 4124 141 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
17483583 17483583 PRJNA929522_S_NODE_894_length_667_cov_5.159933_g831_i0 PRJNA929522 894 667 5.159933 34.41675311 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 285 6.02e-72   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g831 i0 83.607 3.58470764617691 305 48 46 2 53 356 99 402 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 2391 285 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;