RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA929522 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8558253 8558253 PRJNA929522_S_NODE_2487_length_423_cov_1.320000_g2417_i0 PRJNA929522 2487 423 1.32 5.5836 Calothrix sp. PCC 6303 1170562 Bacteria Bacteria 56.5 0.003   NTclustered gi|428233323|gb|CP003610.1| 1170562 g2417 i0 100 0.215130023640662 30 0 7 0 14 43 6273110 6273139 Calothrix sp. PCC 6303, complete genome blastn 91 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. PCC 6303
22931226 22931226 PRJNA929522_S_NODE_5498_length_299_cov_1.022124_g5428_i0 PRJNA929522 5498 299 1.022124 3.05615076 Planktothrix 54304 Bacteria Bacteria 54.7 0.008   NTclustered gi|2261189783|emb|LR882967.1| 132604 g5428 i0 100 0.193979933110368 29 0 10 0 230 258 2935600 2935628 Planktothrix pseudagardhii strain No.713 genome assembly, chromosome: I blastn 58 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix pseudagardhii
23857727 23857727 PRJNA929522_S_NODE_8639_length_250_cov_0.870056_g8569_i0 PRJNA929522 8639 250 0.870056 2.17514 Nostoc sp. UHCC 0870 2914041 Bacteria Bacteria 52.8 0.023   NTclustered gi|2190707562|gb|CP091913.1| 2914041 g8569 i0 100 0.112 28 0 11 0 140 167 94571 94544 Nostoc sp. UHCC 0870 chromosome, complete genome blastn 28 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. UHCC 0870

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;