RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA929522" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 5 ✖

bioproject 1

  • PRJNA929522 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7283423 7283423 PRJNA929522_S_NODE_3786_length_347_cov_1.518248_g3716_i0 PRJNA929522 3786 347 1.518248 5.26832056 Thecamonas trahens 529818 Root_unresolved Root_unresolved 281 3.850000000000001e-71   NTclustered gi|923137048|ref|XM_013906535.1| 461836 g3716 i0 82.704 52.0518731988473 318 53 91 2 7 323 403 87 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_01386), mRNA blastn 18062 281 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16208255 16208255 PRJNA929522_S_NODE_1193_length_593_cov_10.478846_g1127_i0 PRJNA929522 1193 593 10.478846 62.13955678 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 5.74e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g1127 i0 87.64 10.7571669477234 89 9 15 2 151 238 6107 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6379 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
16208256 16208256 PRJNA929522_S_NODE_1253_length_582_cov_2.834971_g1186_i0 PRJNA929522 1253 582 2.834971 16.49953122 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 5.63e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g1186 i0 87.64 11.073883161512 89 9 15 2 151 238 6107 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6445 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
20031986 20031986 PRJNA929522_S_NODE_336_length_1014_cov_6.222104_g297_i0 PRJNA929522 336 1014 6.222104 63.09213456 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 2.78e-22   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g297 i0 81.818 0.209072978303748 143 26 14 0 139 281 148 290 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22582463 22582463 PRJNA929522_S_NODE_6138_length_286_cov_1.990610_g6068_i0 PRJNA929522 6138 286 1.99061 5.6931446 Thecamonas trahens 529818 Root_unresolved Root_unresolved 132 3.3e-26   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g6068 i0 85.827 0.594405594405594 127 14 44 3 44 169 265 142 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 170 132 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;