RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA928559 · 33 ✖

analysis 1

  • blastn · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
904012 904012 PRJNA928559_P_NODE_39441_length_532_cov_5347.211329_g37886_i0 PRJNA928559 39441 532 5347.211329 28447.16427028 uncultured Methanoregula sp. 1005933 Archaea Archaea 730 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g37886 i0 93.227 284.716165413534 502 25 94 9 1 498 3114894 3114398 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 151469 730 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
1253224 1253224 PRJNA928559_P_NODE_88381_length_378_cov_2.704918_g86812_i0 PRJNA928559 88381 378 2.704918 10.22459004 Archaea 2157 Archaea Archaea 237 9.26e-58   NTclustered gi|663518477|gb|KF900844.1| 1456434 g86812 i0 78.249 32.1058201058201 377 76 99 4 1 374 1955 2328 Uncultured marine group II/III euryarchaeote KM3_33_C12 genomic sequence blastn 12136 237 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_33_C12
2178078 2178078 PRJNA928559_P_NODE_161082_length_276_cov_2.645320_g159513_i0 PRJNA928559 161082 276 2.64532 7.3010832 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 510 3.48e-140   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g159513 i0 100 23.3840579710145 276 0 100 0 1 276 1792304 1792029 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 6454 510 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
2178414 2178414 PRJNA928559_P_NODE_183162_length_256_cov_2.513661_g181593_i0 PRJNA928559 183162 256 2.513661 6.43497216 uncultured Methanoregula sp. 1005933 Archaea Archaea 390 4.3399999999999997e-104   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g181593 i0 94.141 112.66796875 256 15 100 0 1 256 3089861 3090116 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 28843 390 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
2528566 2528566 PRJNA928559_P_NODE_188402_length_253_cov_0.866667_g186833_i0 PRJNA928559 188402 253 0.866667 2.19266751 root 1 Root_unresolved Root_unresolved 52.8 0.023   NTclustered gi|2224381021|gb|CP095390.1| 1419050 g186833 i0 100 0.553359683794466 28 0 11 0 75 102 1418096 1418123 Natribaculum breve strain TRM20010 chromosome, complete genome blastn 140 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natribaculum Natribaculum breve
3454597 3454597 PRJNA928559_P_NODE_226243_length_209_cov_5.257353_g224674_i0 PRJNA928559 226243 209 5.257353 10.98786777 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 387 4.42e-103   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g224674 i0 100 46.0956937799043 209 0 100 0 1 209 292481 292689 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 9634 387 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
3454673 3454673 PRJNA928559_P_NODE_25903_length_634_cov_7.206774_g24396_i0 PRJNA928559 25903 634 7.206774 45.69094716 uncultured archaeon 115547 Archaea Archaea 130 2.83e-25   NTclustered gi|220685174|gb|FJ559952.1| 115547 g24396 i0 76.056 15.2586750788644 284 48 42 18 88 356 476 198 Uncultured archaeon clone ZM201_71 16S ribosomal RNA gene, partial sequence blastn 9674 130 1 Archaea               uncultured archaeon
4732477 4732477 PRJNA928559_P_NODE_42584_length_516_cov_21317.155756_g41026_i0 PRJNA928559 42584 516 21317.155756 109996.52370096 uncultured Methanoregula sp. 1005933 Archaea Archaea 937 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g41026 i0 99.419 309.87015503876 516 3 100 0 1 516 3117554 3117039 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 159893 937 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
7280547 7280547 PRJNA928559_P_NODE_144086_length_294_cov_1.963801_g142517_i0 PRJNA928559 144086 294 1.963801 5.77357494 Candidatus Bathyarchaeia archaeon 3045160 Archaea Archaea 222 1.96e-53   NTclustered gi|2791746555|gb|CP166960.1| 3045160 g142517 i0 93.377 5.78231292517007 151 8 51 2 1 151 1645550 1645698 MAG: Candidatus Bathyarchaeia archaeon isolate Bathy6-F28_MillB chromosome blastn 1700 222 1 Archaea   Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia       Candidatus Bathyarchaeia archaeon
7281455 7281455 PRJNA928559_P_NODE_206686_length_245_cov_0.953488_g205117_i0 PRJNA928559 206686 245 0.953488 2.3360456 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 147 9.86e-31   NTclustered gi|808354332|gb|CP011097.2| 1603555 g205117 i0 80.412 1.26938775510204 194 36 79 2 2 194 1336309 1336501 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 311 147 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
7281722 7281722 PRJNA928559_P_NODE_224446_length_224_cov_8.205298_g222877_i0 PRJNA928559 224446 224 8.205298 18.37986752 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 414 2.1999999999999996e-111   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g222877 i0 100 91.8035714285714 224 0 100 0 1 224 292994 293217 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 20564 414 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
7282225 7282225 PRJNA928559_P_NODE_54746_length_466_cov_4.305344_g53180_i0 PRJNA928559 54746 466 4.305344 20.06290304 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 856 0   NTclustered gi|1026536793|gb|KX023321.1| 1846278 g53180 i0 99.785 98.6845493562232 466 1 100 0 1 466 892 1357 Candidatus Nitrosotenuis aquarius strain AQ6f 16S ribosomal RNA gene, partial sequence blastn 45987 856 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
7282277 7282277 PRJNA928559_P_NODE_5946_length_1222_cov_4.832898_g5046_i0 PRJNA928559 5946 1222 4.832898 59.05801356 uncultured Methanoregula sp. 1005933 Archaea Archaea 1194 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g5046 i0 84.653 44.6039279869067 1238 147 99 22 1 1210 3123961 3122739 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 54506 1194 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
7631298 7631298 PRJNA928559_P_NODE_73426_length_412_cov_1.566372_g71857_i0 PRJNA928559 73426 412 1.566372 6.45345264 Thermoproteati 1783275 Archaea Archaea 730 0   NTclustered gi|66794785|emb|AJ831065.1| 13776 g71857 i0 98.78 102.662621359223 410 5 99 0 3 412 812 403 Unidentified archaeon partial 16S rRNA gene, clone 257 blastn 42297 736 0.991847826086957 Archaea               unidentified archaeon
8557434 8557434 PRJNA928559_P_NODE_847_length_2992_cov_14.116136_g662_i0 PRJNA928559 847 2992 14.116136 422.35478912 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 147 1.39e-29   NTclustered gi|2621784586|emb|OY781044.1| 2517205 g662 i0 73.026 9.72359625668449 456 108 15 13 842 1291 992472 992026 MAG: Candidatus Methanomethylophilaceae archaeon isolate 11c15bc4-9f39-4069-9170-00aaf79b19ed genome assembly, chromosome: 1 blastn 29093 147 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
8905861 8905861 PRJNA928559_P_NODE_227887_length_197_cov_4.395161_g226318_i0 PRJNA928559 227887 197 4.395161 8.65846717 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 326 9.1e-85   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g226318 i0 96.447 9.51269035532995 197 7 100 0 1 197 1279 1475 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 1874 326 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
8906069 8906069 PRJNA928559_P_NODE_95087_length_365_cov_3.308219_g93518_i0 PRJNA928559 95087 365 3.308219 12.07499935 Archaea 2157 Archaea Archaea 603 7.629999999999998e-168   NTclustered gi|71842090|gb|DQ133425.1| 29281 g93518 i0 96.448 99.772602739726 366 12 100 1 1 365 570 935 Uncultured crenarchaeote clone E548AIRAC 16S ribosomal RNA gene, partial sequence blastn 36417 603 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
9831104 9831104 PRJNA928559_P_NODE_199888_length_248_cov_0.891429_g198319_i0 PRJNA928559 199888 248 0.891429 2.21074392 Methanothrix soehngenii 2223 Archaea Archaea 381 2.519999999999999e-101   NTclustered gi|328927127|gb|CP002565.1| 990316 g198319 i0 100 45.6693548387097 206 0 100 0 43 248 838476 838271 Methanosaeta concilii GP-6, complete genome blastn 11326 381 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
10181347 10181347 PRJNA928559_P_NODE_138068_length_301_cov_2.342105_g136499_i0 PRJNA928559 138068 301 2.342105 7.04973605 Archaea 2157 Archaea Archaea 472 1.81e-128   NTclustered gi|339646798|gb|JN038011.1| 115547 g136499 i0 96.491 94.4784053156146 285 10 95 0 17 301 179 463 Uncultured archaeon clone ar6.24 16S ribosomal RNA gene, partial sequence blastn 28438 472 1 Archaea               uncultured archaeon
16205961 16205961 PRJNA928559_P_NODE_175593_length_263_cov_1.415789_g174024_i0 PRJNA928559 175593 263 1.415789 3.72352507 Halorubrum sp. 2020YC2 2836432 Archaea Archaea 52.8 0.024   NTclustered gi|2047351610|gb|CP076019.1| 2836432 g174024 i0 100 0.106463878326996 28 0 11 0 32 59 1404453 1404426 Halorubrum sp. 2020YC2 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. 2020YC2
16555740 16555740 PRJNA928559_P_NODE_89293_length_376_cov_4.372937_g87724_i0 PRJNA928559 89293 376 4.372937 16.44224312 Candidatus Nitrosotenuis 1825023 Archaea Archaea 695 0   NTclustered gi|808354332|gb|CP011097.2| 1603555 g87724 i0 100 99.0718085106383 376 0 100 0 1 376 740477 740852 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 37251 695 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
17480891 17480891 PRJNA928559_P_NODE_161794_length_276_cov_1.113300_g160225_i0 PRJNA928559 161794 276 1.1133 3.072708 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 488 1.6299999999999995e-133   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g160225 i0 98.551 76.445652173913 276 4 100 0 1 276 291124 290849 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 21099 488 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
19104054 19104054 PRJNA928559_P_NODE_10695_length_940_cov_7.726644_g9471_i0 PRJNA928559 10695 940 7.726644 72.6304536 Archaea 2157 Archaea Archaea 163 4.21e-35   NTclustered gi|314912325|gb|HQ692040.1| 114243 g9471 i0 75.532 38.718085106383 376 68 38 18 153 512 1287 920 Uncultured euryarchaeote clone ClipA 5 16S ribosomal RNA gene, partial sequence blastn 36395 163 1 Archaea   Methanobacteriati Methanobacteriota         uncultured euryarchaeote
19104082 19104082 PRJNA928559_P_NODE_114935_length_332_cov_7.200772_g113366_i0 PRJNA928559 114935 332 7.200772 23.90656304 Candidatus Nitrosotenuis 1825023 Archaea Archaea 614 3.1799999999999995e-171   NTclustered gi|808354332|gb|CP011097.2| 1603555 g113366 i0 100 104.009036144578 332 0 100 0 1 332 741324 740993 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 34531 614 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
19104420 19104420 PRJNA928559_P_NODE_219715_length_234_cov_2.776398_g218146_i0 PRJNA928559 219715 234 2.776398 6.49677132 Thermoproteati 1783275 Archaea Archaea 433 6.41e-117   NTclustered gi|82618470|gb|DQ278118.1| 29281 g218146 i0 100 97.542735042735 234 0 100 0 1 234 1140 1373 Uncultured crenarchaeote clone OdenA-100ii 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence blastn 22825 433 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
20030640 20030640 PRJNA928559_P_NODE_4656_length_1378_cov_4.020690_g3873_i0 PRJNA928559 4656 1378 4.02069 55.4051082 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 2451 0   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g3873 i0 98.767 76.5297532656023 1379 16 100 1 1 1378 291125 292503 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 105458 2451 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
23854767 23854767 PRJNA928559_P_NODE_142879_length_295_cov_5.378378_g141310_i0 PRJNA928559 142879 295 5.378378 15.8662151 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 516 8.08e-142   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g141310 i0 97.993 72.1796610169492 299 2 100 1 1 295 293844 293546 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 21293 516 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
23855492 23855492 PRJNA928559_P_NODE_192679_length_251_cov_0.876404_g191110_i0 PRJNA928559 192679 251 0.876404 2.19977404 Halosimplex aquaticum 3026162 Archaea Archaea 52.8 0.023   NTclustered gi|2446562038|gb|CP118158.1| 3026162 g191110 i0 96.774 0.123505976095618 31 1 12 0 189 219 1866552 1866582 Halosimplex aquaticum strain XZYJT29 chromosome, complete genome blastn 31 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex aquaticum
25129264 25129264 PRJNA928559_P_NODE_18760_length_729_cov_2.637195_g17313_i0 PRJNA928559 18760 729 2.637195 19.22515155 uncultured marine group II/III euryarchaeote KM3_203_F09 1456423 Archaea Archaea 398 8.139999999999997e-106   NTclustered gi|663517090|gb|KF900805.1| 1456423 g17313 i0 86.179 93.4389574759945 369 49 50 2 57 424 11179 10812 Uncultured marine group II/III euryarchaeote KM3_203_F09 genomic sequence blastn 68117 398 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_203_F09
25130275 25130275 PRJNA928559_P_NODE_52280_length_475_cov_9.927861_g50714_i0 PRJNA928559 52280 475 9.927861 47.15733975 uncultured Methanoregula sp. 1005933 Archaea Archaea 717 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g50714 i0 94.433 91.2168421052632 467 25 98 1 9 474 3123729 3124195 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 43328 717 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
25130525 25130525 PRJNA928559_P_NODE_73380_length_412_cov_1.811209_g71811_i0 PRJNA928559 73380 412 1.811209 7.46218108 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 745 0   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g71811 i0 99.272 40.8373786407767 412 3 100 0 1 412 1789633 1790044 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 16825 745 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
25479276 25479276 PRJNA928559_P_NODE_136400_length_303_cov_2.443478_g134831_i0 PRJNA928559 136400 303 2.443478 7.40373834 Archaea 2157 Archaea Archaea 161 4.49e-35   NTclustered gi|663527907|gb|KF901100.1| 1456516 g134831 i0 82.292 35 192 28 62 6 13 201 24684 24496 Uncultured marine group II/III euryarchaeote KM3_80_H04 genomic sequence blastn 10605 161 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_80_H04
25479515 25479515 PRJNA928559_P_NODE_204900_length_246_cov_0.901734_g203331_i0 PRJNA928559 204900 246 0.901734 2.21826564 Halobacteriales 2235 Archaea Archaea 449 6.74e-122   NTclustered gi|1675275423|gb|MN000441.1| 2243 g203331 i0 99.593 100 246 1 100 0 1 246 678 433 Halobacterium sp. strain PTA096 16S ribosomal RNA gene, partial sequence blastn 24600 449 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;