RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA928559 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7281202 7281202 PRJNA928559_P_NODE_187646_length_253_cov_1.266667_g186077_i0 PRJNA928559 187646 253 1.266667 3.20466751 Kytorhynchus sp. n. CEL-2014 1468206 Platyhelminthes Platyhelminthes 75 4.9e-9   NTclustered gi|588313924|gb|KC869882.1| 1468206 g186077 i0 85.915 0.280632411067194 71 8 28 2 164 233 2199 2130 Kytorhynchus sp. n. CEL-2014 28S ribosomal RNA gene, partial sequence blastn 71 75 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Kytorhynchidae Kytorhynchus Kytorhynchus sp. n. CEL-2014
8557099 8557099 PRJNA928559_P_NODE_58327_length_454_cov_17.737533_g56760_i0 PRJNA928559 58327 454 17.737533 80.52839982 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 736 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g56760 i0 96.622 0.977973568281938 444 13 98 2 1 443 454 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 444 736 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
9829844 9829844 PRJNA928559_P_NODE_113368_length_335_cov_1.564885_g111799_i0 PRJNA928559 113368 335 1.564885 5.24236475 Macrogyrodactylus karibae 696689 Platyhelminthes Platyhelminthes 436 7.459999999999998e-118   NTclustered gi|1346678829|gb|MG973078.1| 696689 g111799 i0 90.149 52.5462686567164 335 33 100 0 1 335 4992 5326 Macrogyrodactylus karibae isolate M_ka small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17603 436 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Gyrodactylidea Gyrodactylidae Macrogyrodactylus Macrogyrodactylus karibae
10181682 10181682 PRJNA928559_P_NODE_226728_length_205_cov_10.856061_g225159_i0 PRJNA928559 226728 205 10.856061 22.25492505 Metazoa 33208 Platyhelminthes Platyhelminthes 130 8.04e-26   NTclustered gi|2620230845|gb|OR797296.1| 132421 g225159 i0 84.173 45.6926829268293 139 17 67 5 68 204 5324 5459 Arthurdendyus triangulatus small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9367 130 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Arthurdendyus Arthurdendyus triangulatus
14930661 14930661 PRJNA928559_P_NODE_160272_length_277_cov_1.911765_g158703_i0 PRJNA928559 160272 277 1.911765 5.29558905 Clonorchis sinensis 79923 Platyhelminthes Platyhelminthes 106 1.93e-18   NTclustered gi|325459339|gb|HM020387.1| 79923 g158703 i0 77.596 11.3321299638989 183 35 66 5 44 226 376 200 Clonorchis sinensis secretory eggshell protein precursor (SEP18.7) mRNA, complete cds blastn 3139 106 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis
17830658 17830658 PRJNA928559_P_NODE_6214_length_1199_cov_12.235346_g5280_i0 PRJNA928559 6214 1199 12.235346 146.70179854 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 204 3.19e-47   NTclustered gi|667755613|gb|KJ887547.1| 1524992 g5280 i0 87.931 15.6246872393661 174 20 15 1 234 407 1156 984 Toia sp. TJ-2014 voucher DNA89LAN 28S ribosomal RNA gene, partial sequence blastn 18734 206 0.990291262135922 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Cicerinidae Toia Toia sp. TJ-2014
21305303 21305303 PRJNA928559_P_NODE_195677_length_250_cov_0.881356_g194108_i0 PRJNA928559 195677 250 0.881356 2.20339 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.023   NTclustered gi|690505019|emb|LN053604.1| 99802 g194108 i0 100 0.224 28 0 11 0 215 242 2870 2897 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0052090 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
22580185 22580185 PRJNA928559_P_NODE_178598_length_260_cov_2.032086_g177029_i0 PRJNA928559 178598 260 2.032086 5.2834236 Macrogyrodactylus karibae 696689 Platyhelminthes Platyhelminthes 272 1.6699999999999996e-68   NTclustered gi|1346678829|gb|MG973078.1| 696689 g177029 i0 85.769 25.8884615384615 260 34 99 3 1 258 6545 6287 Macrogyrodactylus karibae isolate M_ka small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6731 272 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Gyrodactylidea Gyrodactylidae Macrogyrodactylus Macrogyrodactylus karibae
25128994 25128994 PRJNA928559_P_NODE_170500_length_267_cov_3.474227_g168931_i0 PRJNA928559 170500 267 3.474227 9.27618609 Strongylostoma elongatum 297429 Platyhelminthes Platyhelminthes 113 1.1e-20   NTclustered gi|588313925|gb|KC869883.1| 1468203 g168931 i0 75.889 72.2584269662921 253 43 92 17 2 247 1105 1346 Strongylostoma elongatum spinosum 28S ribosomal RNA genes, partial sequence blastn 19293 113 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Typhloplanidae Strongylostoma Strongylostoma elongatum
25130710 25130710 PRJNA928559_P_NODE_87740_length_379_cov_5.274510_g86171_i0 PRJNA928559 87740 379 5.27451 19.9903929 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 468 3.03e-127   NTclustered gi|68479954|gb|DQ076149.1| 6182 g86171 i0 88.947 1.00263852242744 380 40 100 2 1 379 44 422 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 380 468 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;