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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA928559 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6356774 6356774 PRJNA928559_P_NODE_148145_length_290_cov_0.843318_g146576_i0 PRJNA928559 148145 290 0.843318 2.4456222 root 1 Root_unresolved Root_unresolved 335 2.379999999999999e-87   NTclustered gi|18147015|dbj|AB047762.1| 6303 g146576 i0 87.986 40.8344827586207 283 34 98 0 8 290 482 200 Meloidogyne javanica DNA, polymorphic marker for virulence, isolate:MJON-VI blastn 11842 335 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne javanica
7282120 7282120 PRJNA928559_P_NODE_46806_length_497_cov_3.226415_g45244_i0 PRJNA928559 46806 497 3.226415 16.03528255 Pristionchus pauli 376545 Nematoda Nematoda 292 2.63e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g45244 i0 81.492 5.22736418511066 362 61 72 6 64 422 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2598 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
8554760 8554760 PRJNA928559_P_NODE_101947_length_353_cov_2.378571_g100378_i0 PRJNA928559 101947 353 2.378571 8.39635563 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 219 3.1099999999999993e-52   NTclustered gi|256709136|gb|GQ422220.1| 669147 g100378 i0 78.592 26.3767705382436 341 65 95 7 9 345 375 711 Tylopharynx sp. WEM-2009 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 9311 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009
11107669 11107669 PRJNA928559_P_NODE_49189_length_487_cov_100.483092_g47627_i0 PRJNA928559 49189 487 100.483092 489.35265804 Metarhabditis rainai 2735107 Nematoda Nematoda 124 9.92e-24   NTclustered gi|158821902|gb|EU195966.1| 2735107 g47627 i0 78.404 14.1026694045175 213 30 42 15 284 487 3111 2906 Metarhabditis rainai strain DF5091 28S ribosomal RNA gene, partial sequence blastn 6868 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Metarhabditis Metarhabditis rainai
11456517 11456517 PRJNA928559_P_NODE_154489_length_283_cov_1.561905_g152920_i0 PRJNA928559 154489 283 1.561905 4.42019115 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|1288864914|gb|KY468850.1| 45934 g152920 i0 100 10.7420494699647 29 0 10 0 190 218 435 407 Pratylenchus crenatus isolate D12-3 28S ribosomal RNA gene, partial sequence blastn 3040 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus crenatus
16205415 16205415 PRJNA928559_P_NODE_138873_length_300_cov_2.207048_g137304_i0 PRJNA928559 138873 300 2.207048 6.621144 Meloidogyne javanica 6303 Nematoda Nematoda 381 3.1299999999999995e-101   NTclustered gi|18147019|dbj|AB047766.1| 6303 g137304 i0 89.967 11.6233333333333 299 24 99 3 2 300 817 525 Meloidogyne javanica DNA, polymorphic marker for virulence, isolate:MJON-AV blastn 3487 381 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne javanica
17482831 17482831 PRJNA928559_P_NODE_93414_length_368_cov_18.105085_g91845_i0 PRJNA928559 93414 368 18.105085 66.6267128 Caenorhabditis elegans 6239 Nematoda Nematoda 62.1 5.81e-5   NTclustered gi|1972228531|ref|NM_001383003.2| 6239 g91845 i0 97.222 0.271739130434783 36 1 10 0 48 83 85 120 Caenorhabditis elegans 60S ribosomal protein L41 (rpl-41.1), mRNA blastn 100 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20029242 20029242 PRJNA928559_P_NODE_153756_length_284_cov_1.336493_g152187_i0 PRJNA928559 153756 284 1.336493 3.79564012 Caenorhabditis sp. 21 LS-2015 1737332 Nematoda Nematoda 134 9.1e-27   NTclustered gi|1465390354|emb|LS992474.1| 1737332 g152187 i0 78.151 45.1408450704225 238 32 78 11 61 282 4214 3981 Caenorhabditis sp. 21 LS-2015 partial 18S rRNA gene, strain NIC534 blastn 12820 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis sp. 21 LS-2015
20029658 20029658 PRJNA928559_P_NODE_182956_length_256_cov_3.923497_g181387_i0 PRJNA928559 182956 256 3.923497 10.04415232 Meloidogyne arenaria 6304 Nematoda Nematoda 468 1.95e-127   NTclustered gi|18147020|dbj|AB047767.1| 6304 g181387 i0 99.609 45.8046875 256 1 100 0 1 256 1056 801 Meloidogyne arenaria DNA, polymorphic marker for virulence, isolate:MAMG-AV blastn 11726 468 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
20030845 20030845 PRJNA928559_P_NODE_62796_length_440_cov_5.989101_g61227_i0 PRJNA928559 62796 440 5.989101 26.3520444 Pristionchus racemosae 1756234 Nematoda Nematoda 71.3 1.17e-7   NTclustered gi|953064353|gb|KT188888.1| 1756234 g61227 i0 88.333 3.99090909090909 60 5 13 2 7 65 1981 1923 Pristionchus racemosae 28S ribosomal RNA gene, partial sequence blastn 1756 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus racemosae
22930984 22930984 PRJNA928559_P_NODE_80778_length_394_cov_4.654206_g79209_i0 PRJNA928559 80778 394 4.654206 18.33757164 root 1 Root_unresolved Root_unresolved 460 5.29e-125   NTclustered gi|18147015|dbj|AB047762.1| 6303 g79209 i0 88.281 64.8883248730965 384 45 97 0 1 384 9 392 Meloidogyne javanica DNA, polymorphic marker for virulence, isolate:MJON-VI blastn 25566 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne javanica
25130855 25130855 PRJNA928559_P_NODE_98340_length_359_cov_6.335664_g96771_i0 PRJNA928559 98340 359 6.335664 22.74503376 Caenorhabditis plicata 281681 Nematoda Nematoda 167 1.16e-36   NTclustered gi|356605901|gb|JN636145.1| 281681 g96771 i0 82.323 46.158774373259 198 29 55 6 164 359 3059 2866 Caenorhabditis plicata strain SB355 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16571 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis plicata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;