RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA928559 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7281881 7281881 PRJNA928559_P_NODE_30026_length_596_cov_3.009560_g28499_i0 PRJNA928559 30026 596 3.00956 17.9369776 Candidatus Minusculum obligatum 1948790 Bacteria Bacteria 630 5.9499999999999984e-176   NTclustered gi|2862534883|gb|CP174360.1| 1948790 g28499 i0 86.528 128.575503355705 579 70 97 8 20 595 191634 191061 MAG: Patescibacteria group bacterium UBA2103 chromosome, complete genome blastn 76631 630 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Candidatus Phycocordibacterales Candidatus Phycocordibacteraceae Candidatus Minusculum Candidatus Minusculum obligatum
12383632 12383632 PRJNA928559_P_NODE_82450_length_391_cov_1.603774_g80881_i0 PRJNA928559 82450 391 1.603774 6.27075634 Minisyncoccota bacterium 2053589 Bacteria Bacteria 351 3.289999999999999e-92   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g80881 i0 83.204 13.2378516624041 387 61 98 3 7 391 441718 441334 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 5176 351 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
17481808 17481808 PRJNA928559_P_NODE_22214_length_677_cov_2.625828_g20727_i0 PRJNA928559 22214 677 2.625828 17.77685556 Candidatus Phycocordibacter aenigmaticus 1948796 Bacteria Bacteria 525 3.31e-144   NTclustered gi|2862534145|gb|CP174359.1| 1948796 g20727 i0 80.87 42.9675036927622 690 113 100 16 1 677 75241 75924 MAG: Patescibacteria group bacterium UBA2163 chromosome, complete genome blastn 29089 525 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Candidatus Phycocordibacterales Candidatus Phycocordibacteraceae Candidatus Phycocordibacter Candidatus Phycocordibacter aenigmaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;