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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA928559 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
903921 903921 PRJNA928559_P_NODE_32901_length_573_cov_18.344000_g31367_i0 PRJNA928559 32901 573 18.344 105.11112 Geranomyces variabilis 109894 Fungi Fungi 257 1.12e-63   NTclustered gi|1866582431|gb|MT730606.1| 109894 g31367 i0 95.625 27.5549738219895 160 7 28 0 376 535 4464 4623 Geranomyces variabilis isolate AF30 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15789 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
2528474 2528474 PRJNA928559_P_NODE_165062_length_272_cov_12.934673_g163493_i0 PRJNA928559 165062 272 12.934673 35.18231056 Fungi 4751 Fungi Fungi 209 1.4e-49   NTclustered gi|219958333|gb|FJ565873.1| 175247 g163493 i0 87.5 68.9375 184 19 67 4 81 262 349 530 Uncultured Chytridiomycota clone A11YA17RM1 large subunit ribosomal RNA gene, partial sequence blastn 18751 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
6357080 6357080 PRJNA928559_P_NODE_226345_length_208_cov_7.185185_g224776_i0 PRJNA928559 226345 208 7.185185 14.9451848 root 1 Root_unresolved Root_unresolved 254 4.65e-63   NTclustered gi|82398216|gb|DQ273778.1| 109897 g224776 i0 88.942 98.5480769230769 208 20 99 3 3 208 2686 2892 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 20498 254 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
7282165 7282165 PRJNA928559_P_NODE_49706_length_485_cov_9.922330_g48144_i0 PRJNA928559 49706 485 9.92233 48.1233005 Nowakowskiella sp. 2012159 Fungi Fungi 187 1.2399999999999997e-42   NTclustered gi|1866582490|gb|MT730665.1| 2012159 g48144 i0 88.05 43.7979381443299 159 17 33 2 111 268 4631 4474 Nowakowskiella sp. isolate JEL0078 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21242 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp.
11105929 11105929 PRJNA928559_P_NODE_134929_length_305_cov_1.939655_g133360_i0 PRJNA928559 134929 305 1.939655 5.91594775 uncultured Chytridiomycota 175247 Fungi Fungi 78.7 4.69e-10   NTclustered gi|262235206|gb|GQ995417.1| 175247 g133360 i0 81.633 20.4754098360656 98 15 32 3 23 119 925 830 Uncultured Chytridiomycota clone T1P1AeC08 18S ribosomal RNA gene, partial sequence blastn 6245 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
11107863 11107863 PRJNA928559_P_NODE_64949_length_434_cov_3.088643_g63380_i0 PRJNA928559 64949 434 3.088643 13.40471062 Synchytrium endobioticum 286115 Fungi Fungi 171 1.1099999999999998e-37   NTclustered gi|530788923|gb|KF160871.1| 286115 g63380 i0 86.164 35.8502304147465 159 21 36 1 272 429 243 85 Synchytrium endobioticum voucher DAOM_229326 28S ribosomal RNA gene, partial sequence; 28S-18S ribosomal RNA intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15559 171 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
11456717 11456717 PRJNA928559_P_NODE_213089_length_242_cov_50.579882_g211520_i0 PRJNA928559 213089 242 50.579882 122.40331444 Chytridiomycetes 451435 Fungi Fungi 145 3.5e-30   NTclustered gi|1463933712|gb|MF576094.1| 109897 g211520 i0 80.693 32.6198347107438 202 26 82 7 44 242 692 501 Gaertneriomyces semiglobifer voucher DAOMC BR270 18S small subunit ribosomal RNA gene, partial sequence blastn 7894 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
11456759 11456759 PRJNA928559_P_NODE_221949_length_230_cov_2.751592_g220380_i0 PRJNA928559 221949 230 2.751592 6.3286616 Chytridiomycota 4761 Fungi Fungi 224 4.11e-54   NTclustered gi|175539|gb|M62704.1|NEORR18SA 4757 g220380 i0 100 64.5869565217391 121 0 53 0 48 168 963 843 Neocallimastix frontalis (strain MCH3) 18S ribosomal RNA blastn 14855 224 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
14007172 14007172 PRJNA928559_P_NODE_65891_length_431_cov_13.153631_g64322_i0 PRJNA928559 65891 431 13.153631 56.69214961 Chytridiomycota 4761 Fungi Fungi 248 4.94e-61   NTclustered gi|2245515292|gb|ON614317.1| 4757 g64322 i0 94.969 36.7447795823666 159 7 37 1 1 159 246 403 Neocallimastix frontalis clone YoDo17_7 large subunit ribosomal RNA gene, partial sequence blastn 15837 248 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
18754990 18754990 PRJNA928559_P_NODE_20855_length_696_cov_1275.537721_g19381_i0 PRJNA928559 20855 696 1275.537721 8877.74253816 Kappamyces laurelensis 261097 Fungi Fungi 191 1.4099999999999996e-43   NTclustered gi|1402550332|ref|NG_060251.1| 261097 g19381 i0 78.287 35.7686781609195 327 49 45 15 1 315 2121 1805 Kappamyces laurelensis UACCC PL098 28S rRNA gene, partial sequence; from reference material blastn 24895 191 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces laurelensis
19104564 19104564 PRJNA928559_P_NODE_52315_length_475_cov_3.597015_g50749_i0 PRJNA928559 52315 475 3.597015 17.08582125 Rhizophlyctis 64515 Fungi Fungi 628 1.68e-175   NTclustered gi|1866582753|gb|MT730928.1| 64517 g50749 i0 90.566 100.471578947368 477 41 100 4 1 475 4421 3947 Rhizophlyctis rosea isolate KP09 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 47724 628 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
23854984 23854984 PRJNA928559_P_NODE_159679_length_278_cov_1.170732_g158110_i0 PRJNA928559 159679 278 1.170732 3.25463496 Fimicolochytrium jonesii 1396493 Fungi Fungi 213 1.11e-50   NTclustered gi|2432078713|ref|XM_053070434.1| 1396493 g158110 i0 85.93 63.9568345323741 199 28 72 0 80 278 346 148 Fimicolochytrium jonesii uncharacterized protein (EV422DRAFT_530914), mRNA blastn 17780 213 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
25479801 25479801 PRJNA928559_P_NODE_9360_length_997_cov_15.642857_g8219_i0 PRJNA928559 9360 997 15.642857 155.95928429 Chytridiomycetes 451435 Fungi Fungi 636 2.1899999999999997e-177   NTclustered gi|1866582793|gb|MT730968.1| 4816 g8219 i0 79.846 90.8866599799398 908 153 90 22 36 932 5060 4172 Spizellomyces acuminatus isolate PLAUS Ad 20 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 90614 641 0.992199687987519 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces acuminatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;